Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p38300 Brassica napus
A02p09730 Brassica napus
A03p39480 Brassica napus
A05p33580 Brassica napus
Aa31LG8G3020 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis
Actinidia01745 Actinidia chinensis
Actinidia15761 Actinidia chinensis
Ah.01g020590 Amaranthus hybridus
AL3G28480 Arabidopsis lyrata
AL3G28490 Arabidopsis lyrata
Aqoxy4G02272 Aquilegia oxysepala
Aqoxy7G02289 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea
AT3G15820 Arabidopsis thaliana
AT3G15830 Arabidopsis thaliana
Atru.chr1.2949 Acer truncatum
AUR62011519 Chenopodium quinoa
AUR62016337 Chenopodium quinoa
BcaB01g04346 Brassica carinata
BcaB04g20901 Brassica carinata
BcaB05g22200 Brassica carinata
BcaB06g25690 Brassica carinata
BcaB08g35892 Brassica carinata
BcaC01g03855 Brassica carinata
BcaC03g14245 Brassica carinata
BcaC05g28930 Brassica carinata
BcaC09g48559 Brassica carinata
BolC1t04818H Brassica oleracea
BolC2t07727H Brassica oleracea
BolC3t17065H Brassica oleracea
BolC5t33802H Brassica oleracea
BraA01t03881Z Brassica rapa
BraA02t06038Z Brassica rapa
BraA03t13098Z Brassica rapa
BraA05t22181Z Brassica rapa
C01p48640 Brassica napus
C02p16260 Brassica napus
C03p47880 Brassica napus
C05p50570 Brassica napus
CAN.G1503.7 Capsicum annuum
CAN.G407.80 Capsicum annuum
CANSAT56G4089 Cannabis sativa
CARHR090910 Cardamine hirsuta
CARHR090920 Cardamine hirsuta
Carub.0003s1556 Capsella rubella
Carub.0003s1557 Capsella rubella
Ca_20447_v3 Cicer arietinum L.
Cc04_g04400 Coffea canephora
CDE07G1814 Ceratophyllum demersum
Cfa001960 Carpinus fangiana
Ciclev10026224m.g Citrus clementina
CiPaw.01G248300 Carya illinoinensis
ClCG07G012460 Citrullus lanatus
COL.COLO4_11948 Corchorus olitorius
Cpa.g.sc10.268 Carica papaya
CsaV3_4G001700 Cucumis sativus L.
CSS0029540 Camellia sinensis var. sinensis
CSS0043041 Camellia sinensis var. sinensis
DCAR_025511 Daucus carota
Dinv30605 Davidia involucrata
Duzib192G0312 Durio zibethinus
Duzib235G0370 Durio zibethinus
ECA232G2164 Erigeron canadensis
EL10Ac9g21900 Beta vulgaris
Eucgr.F03877 Eucalyptus grandis
FAN02G2528 Fragaria x ananassa
FAN05G3204 Fragaria x ananassa
FAN09G0069 Fragaria x ananassa
FAN14G0864 Fragaria x ananassa
FvH4_6g29670 Fragaria vesca
Glyma.07G029800 Glycine max
Glyma.08G213100 Glycine max
Gohir.A05G123350 Gossypium hirsutum
Gohir.A06G185500 Gossypium hirsutum
Gohir.D05G124300 Gossypium hirsutum
Gohir.D06G192100 Gossypium hirsutum
Gorai.009G128300 Gossypium raimondii
Gorai.010G225300 Gossypium raimondii
GSVIVG01017341001 Vitis vinifera
HanXRQChr02g0058561 Helianthus annuus
HanXRQChr16g0500411 Helianthus annuus
Haze_16560 Corylus avellana
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla
HPP92_023144 Vanilla planifolia
Hund06558 Selenicereus undatus
Lalb_Chr01g0012351 Lupinus albus
Lalb_Chr25g0279281 Lupinus albus
Lalb_Chr25g0279291 Lupinus albus
Lj3g0004144 Lotus japonicus
Lj3g0021663 Lotus japonicus
Lj5A72T20 Lonicera japonica
Lj5P198T82 Lonicera japonica
Lj5P204T31 Lonicera japonica
Lj6P700T22 Lonicera japonica
Lj9A500T78 Lonicera japonica
LjContig00542g0021230 Lotus japonicus
Lsat_1_v5_gn_1_34380 Lactuca sativa
Lsat_1_v5_gn_4_90081 Lactuca sativa
Manes.04G112600 Manihot esculenta
Manes.11G056900 Manihot esculenta
Mapoly0019s0013 Marchantia polymorpha
MBI04_g19388_MAGBIO Magnolia biondii
MBI04_g42944_MAGBIO Magnolia biondii
MD17G1212200 Malus domestica
Medtr4g010120 Medicago truncatula
MELO3C017864.2 Cucumis melo
Migut.I00763 Erythranthe guttata
MSTRG.11142 Avicennia marina
Nitab4.5_0000373g0050 Nicotiana tabacum
Nitab4.5_0000373g0060 Nicotiana tabacum
Nitab4.5_0003463g0060 Nicotiana tabacum
Nitab4.5_0008575g0020 Nicotiana tabacum
Nn5g27834 Nelumbo nucifera
Nn8g39505 Nelumbo nucifera
Oeu013862.1 Olea europaea
Oeu013866.1 Olea europaea
Oeu013867.1 Olea europaea
Oeu042081.1 Olea europaea
Oeu042085.1 Olea europaea
Os06g0607100 Oryza sativa ssp. japonica
Peaxi162Scf00207g00630 Petunia axillaris
Peaxi162Scf00332g00619 Petunia axillaris
PGR102G1411 Punica granatum
PGSC0003DMG400000640 Solanum tuberosum
PGSC0003DMG400028510 Solanum tuberosum
Phvul.010G156400 Phaseolus vulgaris
Potri.001G204100 Populus trichocarpa
Potri.003G032200 Populus trichocarpa
Pp3c20_11410 Physcomitrium patens
Pp3c8_10870 Physcomitrium patens
Prupe.3G087400 Prunus persica
Prupe.3G087500 Prunus persica
Psat7g257200 Pisum sativum
PSO017G2363 Papaver somniferum
PSO170G3116 Papaver somniferum
QL03p052981 Quercus lobata
QL05p029813 Quercus lobata
RcHm_v2.0_Chr2g0135261 Rosa chinensis
Rhsim08G0212900 Rhododendron simsii
Sabra01G0157700 Salix brachista
Sabra03G0018400 Salix brachista
SalBow2G2770 Salvia bowleyana
Sc10g0005940 Simmondsia chinensis
Sc10g0008080 Simmondsia chinensis
Sed0008120 Sechium edule
SGA_v2.0_scaffold37G14766 Striga asiatica
Solyc03g116740.3 Solanum lycopersicum
Solyc06g068150.3 Solanum lycopersicum
Sopen03g035650 Solanum pennellii
Sopen06g025420 Solanum pennellii
Sp3g14140 Schrenkiella parvula
Sp6g17250 Schrenkiella parvula
TAR383G0028 Trochodendron aralioides
THA.LOC104810509 Tarenaya hassleriana
Thecc.06G024300 Theobroma cacao
Thecc.06G024700 Theobroma cacao
Thecc.06G024900 Theobroma cacao
Thhalv10015624m.g Eutrema salsugineum
Thhalv10021241m.g Eutrema salsugineum
TPR.G38651 Trifolium pratense
TWI18G0582 Tripterygium wilfordii
unitig_699.g19094 Utricularia gibba
VMungo0331G0004 Vigna mungo
Zm00001eb386530 Zea mays

User provided reference genes

Program Settings