Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A09p51920 Brassica napus
Aa31LG10G13940 Aethionema arabicum
Actinidia27110 Actinidia chinensis
Ah.13g073520 Amaranthus hybridus
AL5G41720 Arabidopsis lyrata
Aqoxy7G00569 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4JR04K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5DCW4K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.60591L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.E9H45Q Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GGUP18 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HIJ85I Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HJ8Q1I Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XY21PC Arachis hypogaea
AT3G59650 Arabidopsis thaliana
ATR0733G162 Amborella trichopoda
Atru.chr12.1273 Acer truncatum
Atru.chr12.1293 Acer truncatum
Atru.chr12.1301 Acer truncatum
Atru.chr4.2919 Acer truncatum
AUR62002389 Chenopodium quinoa
AUR62023799 Chenopodium quinoa
BcaB02g07455 Brassica carinata
BcaC02g10824 Brassica carinata
BcaC07g40496 Brassica carinata
BcaC08g44998 Brassica carinata
BolC4t23981H Brassica oleracea
BolC6t37793H Brassica oleracea
BolC8t51067H Brassica oleracea
BraA07t30117Z Brassica rapa
BraA09t40628Z Brassica rapa
C04p24770 Brassica napus
C08p34650 Brassica napus
CAN.G525.23 Capsicum annuum
CANSAT80G2644 Cannabis sativa
CARHR099320 Cardamine hirsuta
CARHR170020 Cardamine hirsuta
Carub.0005s2637 Capsella rubella
Ca_10539_v3 Cicer arietinum L.
Ca_23424_v3 Cicer arietinum L.
Cc02_g26370 Coffea canephora
Cc03_g14030 Coffea canephora
CDE02G1869 Ceratophyllum demersum
CDE09G0571 Ceratophyllum demersum
Cfa015042 Carpinus fangiana
Ciclev10022904m.g Citrus clementina
CiPaw.11G096400 Carya illinoinensis
CiPaw.12G066300 Carya illinoinensis
ClCG07G015230 Citrullus lanatus
COL.COLO4_08144 Corchorus olitorius
Cpa.g.sc10.180 Carica papaya
Cre06.g270650 Chlamydomonas reinhardtii
CsaV3_4G002820 Cucumis sativus L.
CSS0039414 Camellia sinensis var. sinensis
CSS0047181 Camellia sinensis var. sinensis
DCAR_009572 Daucus carota
DCAR_029674 Daucus carota
Dinv33200 Davidia involucrata
Duzib151G0052 Durio zibethinus
Duzib212G0574 Durio zibethinus
ECA240G1468 Erigeron canadensis
ECA247G1539 Erigeron canadensis
EL10Ac3g06082 Beta vulgaris
EL10Ac6g15364 Beta vulgaris
Eucgr.G02225 Eucalyptus grandis
FAN01G1948 Fragaria x ananassa
FAN03G3355 Fragaria x ananassa
FAN06G1493 Fragaria x ananassa
FAN24G1973 Fragaria x ananassa
FvH4_2g13530 Fragaria vesca
FvH4_7g06200 Fragaria vesca
Glyma.05G102000 Glycine max
Glyma.07G044001 Glycine max
Glyma.17G164900 Glycine max
Gohir.A05G367700 Gossypium hirsutum
Gohir.A10G143100 Gossypium hirsutum
Gohir.D02G135200 Gossypium hirsutum
Gohir.D04G047600 Gossypium hirsutum
Gohir.D04G172540 Gossypium hirsutum
Gohir.D05G153250 Gossypium hirsutum
Gohir.D08G078000 Gossypium hirsutum
Gohir.D08G220700 Gossypium hirsutum
Gohir.D10G075200 Gossypium hirsutum
Gohir.D10G123800 Gossypium hirsutum
Gorai.004G076200 Gossypium raimondii
Gorai.004G083000 Gossypium raimondii
Gorai.004G234500 Gossypium raimondii
Gorai.005G151300 Gossypium raimondii
Gorai.011G081000 Gossypium raimondii
Gorai.011G136700 Gossypium raimondii
Gorai.012G053000 Gossypium raimondii
Gorai.012G161800 Gossypium raimondii
GSVIVG01038138001 Vitis vinifera
HanXRQChr09g0264591 Helianthus annuus
HanXRQChr10g0286001 Helianthus annuus
Hma1.2p1_0150F.1_g066800 Hydrangea macrophylla
Hma1.2p1_0307F.1_g119895 Hydrangea macrophylla
HPP92_007604 Vanilla planifolia
Hund04335 Selenicereus undatus
Lalb_Chr04g0253841 Lupinus albus
Lalb_Chr10g0101191 Lupinus albus
Lj1g0017974 Lotus japonicus
Lj3g0000340 Lotus japonicus
Lsat_1_v5_gn_2_131080 Lactuca sativa
Lsat_1_v5_gn_5_190681 Lactuca sativa
Lsat_1_v5_gn_6_23540 Lactuca sativa
Lsat_1_v5_gn_6_33001 Lactuca sativa
Manes.06G021100 Manihot esculenta
Mapoly0027s0066 Marchantia polymorpha
MBI11_g23942_MAGBIO Magnolia biondii
MCO09G643 Micromonas commoda
MD08G1230600 Malus domestica
Medtr8g022770 Medicago truncatula
MELO3C017759.2 Cucumis melo
Migut.F01587 Erythranthe guttata
MSTRG.27564 Avicennia marina
Nitab4.5_0000902g0310 Nicotiana tabacum
Nitab4.5_0007872g0010 Nicotiana tabacum
Nn1g09691 Nelumbo nucifera
Oeu016610.1 Olea europaea
Os03g0207250 Oryza sativa ssp. japonica
Peaxi162Scf00196g00222 Petunia axillaris
Peaxi162Scf00474g00723 Petunia axillaris
PGR142G4086 Punica granatum
PGSC0003DMG401023624 Solanum tuberosum
Phvul.003G238300 Phaseolus vulgaris
Phvul.010G124900 Phaseolus vulgaris
Potri.013G126200 Populus trichocarpa
Pp3c1_20100 Physcomitrium patens
Prupe.1G206900 Prunus persica
Psat1g223520 Pisum sativum
Psat4g166320 Pisum sativum
PSO017G5565 Papaver somniferum
PSO591G0183 Papaver somniferum
PSO675G0737 Papaver somniferum
PSO832G1844 Papaver somniferum
QL04p073242 Quercus lobata
QL04p093649 Quercus lobata
QL10p055721 Quercus lobata
RcHm_v2.0_Chr1g0333831 Rosa chinensis
Rhsim02G0084000 Rhododendron simsii
Rhsim03G0176800 Rhododendron simsii
Sabra13G0105500 Salix brachista
SalBow2G3321 Salvia bowleyana
SalBow6G6028 Salvia bowleyana
Sed0002539 Sechium edule
SEGI_18755 Sequoiadendron giganteum
SGA_v2.0_scaffold49G18240 Striga asiatica
SHI24203 Sapria himalayana
SMO347G0376 Selaginella moellendorffii
Solyc04g014390.3 Solanum lycopersicum
Sopen04g006520 Solanum pennellii
Sp2g07880 Schrenkiella parvula
Sp5g03530 Schrenkiella parvula
TAR493G0004 Trochodendron aralioides
TAR629G0957 Trochodendron aralioides
THA.LOC104804007 Tarenaya hassleriana
Thecc.04G166300 Theobroma cacao
Thecc.10G088100 Theobroma cacao
Thhalv10006316m.g Eutrema salsugineum
TPR.G16667 Trifolium pratense
TPR.G31074 Trifolium pratense
TWI32G1250 Tripterygium wilfordii
TWI34G1638 Tripterygium wilfordii
unitig_899.g14470 Utricularia gibba
vmacro16589 Vaccinium macrocarpon
VMungo0251G3068 Vigna mungo
Zm00001eb007240 Zea mays
Zm00001eb400580 Zea mays

User provided reference genes

Program Settings