Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p41680 Brassica napus
A10p31560 Brassica napus
Aa31LG11G5410 Aethionema arabicum
Aa31LG3G3400 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.2559 Anthoceros agrestis
Actinidia18568 Actinidia chinensis
Actinidia18569 Actinidia chinensis
Ah.04g163610 Amaranthus hybridus
AL3G21970 Arabidopsis lyrata
AL3G45840 Arabidopsis lyrata
AL6G14190 Arabidopsis lyrata
Aqoxy1G00968 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VIL3TT Arachis hypogaea
AT3G10550 Arabidopsis thaliana
AT5G04540 Arabidopsis thaliana
ATR0820G117 Amborella trichopoda
Atru.chr12.952 Acer truncatum
AUR62041535 Chenopodium quinoa
AUR62041537 Chenopodium quinoa
BcaB02g10205 Brassica carinata
BcaB04g21235 Brassica carinata
BcaC06g32164 Brassica carinata
BcaNung05805 Brassica carinata
BolC1t05384H Brassica oleracea
BolC2t06155H Brassica oleracea
BolC9t59967H Brassica oleracea
BraA01t04242Z Brassica rapa
BraA02t04817Z Brassica rapa
BraA10t45202Z Brassica rapa
C02p01980 Brassica napus
C09p72230 Brassica napus
CAN.G135.58 Capsicum annuum
CANSAT56G0904 Cannabis sativa
CARHR085070 Cardamine hirsuta
CARHR085080 Cardamine hirsuta
CARHR208730 Cardamine hirsuta
Carub.0003s0979 Capsella rubella
Carub.0006s0348 Capsella rubella
Ca_10484_v3 Cicer arietinum L.
Cc02_g10300 Coffea canephora
CDE06G2538 Ceratophyllum demersum
Cfa026029 Carpinus fangiana
Ciclev10031728m.g Citrus clementina
CiPaw.13G035500 Carya illinoinensis
CiPaw.14G028000 Carya illinoinensis
ClCG08G008030 Citrullus lanatus
COL.COLO4_34171 Corchorus olitorius
Cpa.g.c33984 Carica papaya
Cpa.g.sc942.1 Carica papaya
CsaV3_2G032910 Cucumis sativus L.
CSS0018543 Camellia sinensis var. sinensis
CSS0020257 Camellia sinensis var. sinensis
DCAR_019044 Daucus carota
Dinv31284 Davidia involucrata
Duzib114G0707 Durio zibethinus
Duzib128G0631 Durio zibethinus
ECA233G2766 Erigeron canadensis
ECA238G3394 Erigeron canadensis
EL10Ac4g08605 Beta vulgaris
Eucgr.J01026 Eucalyptus grandis
FAN01G1656 Fragaria x ananassa
FAN03G2327 Fragaria x ananassa
FAN06G5118 Fragaria x ananassa
FAN10G1549 Fragaria x ananassa
FvH4_7g06400 Fragaria vesca
Glyma.10G201300 Glycine max
Glyma.20G189100 Glycine max
Gohir.A01G129200 Gossypium hirsutum
Gohir.A12G088900 Gossypium hirsutum
Gohir.D01G118800 Gossypium hirsutum
Gohir.D12G087300 Gossypium hirsutum
Gorai.002G144900 Gossypium raimondii
Gorai.008G097500 Gossypium raimondii
GSVIVG01034690001 Vitis vinifera
HanXRQChr08g0218151 Helianthus annuus
HanXRQChr12g0368431 Helianthus annuus
HanXRQChr13g0403891 Helianthus annuus
HanXRQChr14g0456291 Helianthus annuus
HanXRQChr14g0456301 Helianthus annuus
Haze_02630 Corylus avellana
Hma1.2p1_0492F.1_g164740 Hydrangea macrophylla
Hma1.2p1_0492F.1_g164750 Hydrangea macrophylla
HPP92_001744 Vanilla planifolia
Hund22302 Selenicereus undatus
Lalb_Chr02g0151281 Lupinus albus
Lalb_Chr21g0313171 Lupinus albus
Lj2C27G6 Lonicera japonica
Lj3A933G36 Lonicera japonica
Lj5g0013826 Lotus japonicus
Lsat_1_v5_gn_2_102840 Lactuca sativa
Lsat_1_v5_gn_6_80241 Lactuca sativa
Lsat_1_v5_gn_8_23081 Lactuca sativa
Manes.10G054700 Manihot esculenta
Mapoly0087s0031 Marchantia polymorpha
MBI17_g20211_MAGBIO Magnolia biondii
MBI17_g20218_MAGBIO Magnolia biondii
MBI17_g46746_MAGBIO Magnolia biondii
MD02G1244600 Malus domestica
MD07G1072600 Malus domestica
Medtr1g092570 Medicago truncatula
Medtr1g492590 Medicago truncatula
MELO3C019875.2 Cucumis melo
Migut.F01661 Erythranthe guttata
MSTRG.8112 Avicennia marina
Nitab4.5_0000593g0020 Nicotiana tabacum
Nitab4.5_0003408g0010 Nicotiana tabacum
Nitab4.5_0003408g0020 Nicotiana tabacum
Nn2g13965 Nelumbo nucifera
Nn6g35085 Nelumbo nucifera
Oeu021819.1 Olea europaea
Oeu026556.1 Olea europaea
Oeu026557.1 Olea europaea
Oeu032726.1 Olea europaea
Os08g0556700 Oryza sativa ssp. japonica
Peaxi162Scf00398g00058 Petunia axillaris
PGR044G0968 Punica granatum
PGSC0003DMG401027320 Solanum tuberosum
PGSC0003DMG402027320 Solanum tuberosum
Phvul.007G105800 Phaseolus vulgaris
Potri.008G026900 Populus trichocarpa
Potri.010G233600 Populus trichocarpa
Pp3c18_20050 Physcomitrium patens
Pp3c22_15020 Physcomitrium patens
Prupe.2G090700 Prunus persica
Psat0s3097g0040 Pisum sativum
Psat0s4326g0040 Pisum sativum
Psat6g175320 Pisum sativum
PSO339G1524 Papaver somniferum
PSO384G3766 Papaver somniferum
QL04p040652 Quercus lobata
QL04p040713 Quercus lobata
RcHm_v2.0_Chr0c16g0499861 Rosa chinensis
RcHm_v2.0_Chr1g0334491 Rosa chinensis
RcHm_v2.0_Chr2g0132831 Rosa chinensis
RcHm_v2.0_Chr4g0433221 Rosa chinensis
Rhsim01G0150300 Rhododendron simsii
Rhsim03G0109700 Rhododendron simsii
Sabra08G0018400 Salix brachista
Sabra10G0181200 Salix brachista
Sc20g0001360 Simmondsia chinensis
Sed0024945 Sechium edule
Sed0026233 Sechium edule
SEGI_16113 Sequoiadendron giganteum
SGA_v2.0_scaffold62G21320 Striga asiatica
SHI21312 Sapria himalayana
SHI21313 Sapria himalayana
SHI21315 Sapria himalayana
SMO367G0225 Selaginella moellendorffii
Solyc11g007670.3 Solanum lycopersicum
Sopen11g003530 Solanum pennellii
Sp3g08830 Schrenkiella parvula
Sp6g38220 Schrenkiella parvula
TAR371G0071 Trochodendron aralioides
TAR623G0905 Trochodendron aralioides
TAR633G0581 Trochodendron aralioides
THA.LOC104816452 Tarenaya hassleriana
THA.LOC104823194 Tarenaya hassleriana
Thecc.10G097700 Theobroma cacao
Thhalv10012689m.g Eutrema salsugineum
Thhalv10020062m.g Eutrema salsugineum
TPR.G2517 Trifolium pratense
TWI38G0502 Tripterygium wilfordii
unitig_736.g22321 Utricularia gibba
vmacro07216 Vaccinium macrocarpon
vmacro07217 Vaccinium macrocarpon
VMungo0720G1942 Vigna mungo
Zm00001eb039660 Zea mays
Zm00001eb215930 Zea mays

User provided reference genes

Program Settings