Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p41230 Brassica napus
A05p30130 Brassica napus
Aa31LG8G6240 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.488 Anthoceros agrestis
Actinidia17883 Actinidia chinensis
Actinidia27968 Actinidia chinensis
Ah.01g018160 Amaranthus hybridus
AL1G57290 Arabidopsis lyrata
AL3G32890 Arabidopsis lyrata
Aqoxy6G02887 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.38IWEY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JR6IQW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T2YEM3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W9R5L5 Arachis hypogaea
AT1G49810 Arabidopsis thaliana
AT3G19490 Arabidopsis thaliana
ATR0691G115 Amborella trichopoda
Atru.chr5.2582 Acer truncatum
AUR62010284 Chenopodium quinoa
AUR62039105 Chenopodium quinoa
BcaB04g19041 Brassica carinata
BcaB06g26006 Brassica carinata
BcaB06g26008 Brassica carinata
BcaC01g03629 Brassica carinata
BcaC02g11330 Brassica carinata
BcaC05g28472 Brassica carinata
BolC3t17326H Brassica oleracea
BolC5t33281H Brassica oleracea
BraA03t13276Z Brassica rapa
BraA05t21853Z Brassica rapa
C03p50340 Brassica napus
C05p45560 Brassica napus
CAN.G621.5 Capsicum annuum
CANSAT25G1226 Cannabis sativa
CANSAT25G3047 Cannabis sativa
CARHR039870 Cardamine hirsuta
CARHR094910 Cardamine hirsuta
Carub.0001s3900 Capsella rubella
Carub.0003s1929 Capsella rubella
Ca_11083_v3 Cicer arietinum L.
CBR_g29562 Chara braunii
CBR_g29563 Chara braunii
CBR_g39138 Chara braunii
Cc02_g19190 Coffea canephora
CDE04G0108 Ceratophyllum demersum
Cfa004570 Carpinus fangiana
Ciclev10028086m.g Citrus clementina
Ciclev10030164m.g Citrus clementina
CiPaw.05G010800 Carya illinoinensis
CiPaw.06G169900 Carya illinoinensis
ClCG05G010240 Citrullus lanatus
COL.COLO4_32603 Corchorus olitorius
Cpa.g.sc106.85 Carica papaya
Cre09.g395288 Chlamydomonas reinhardtii
CsaV3_3G018250 Cucumis sativus L.
CSS0041442 Camellia sinensis var. sinensis
DCAR_001640 Daucus carota
Dinv15758 Davidia involucrata
Dinv42185 Davidia involucrata
Duzib052G0638 Durio zibethinus
Duzib052G0741 Durio zibethinus
Duzib132G1089 Durio zibethinus
Duzib132G1182 Durio zibethinus
ECA236G2359 Erigeron canadensis
EL10Ac9g22290 Beta vulgaris
Eucgr.G01360 Eucalyptus grandis
Eucgr.H03221 Eucalyptus grandis
FAN15G2578 Fragaria x ananassa
FAN20G2197 Fragaria x ananassa
FAN24G2682 Fragaria x ananassa
FAN27G3441 Fragaria x ananassa
FvH4_2g05320 Fragaria vesca
Glyma.10G261350 Glycine max
Glyma.20G127600 Glycine max
Glyma.20G129500 Glycine max
Gohir.A03G186600 Gossypium hirsutum
Gohir.D02G207400 Gossypium hirsutum
Gorai.005G235300 Gossypium raimondii
GSVIVG01003166001 Vitis vinifera
HanXRQChr02g0055551 Helianthus annuus
HanXRQChr02g0055561 Helianthus annuus
HanXRQChr04g0106691 Helianthus annuus
HanXRQChr04g0128091 Helianthus annuus
HanXRQChr16g0510101 Helianthus annuus
Haze_10162 Corylus avellana
Hma1.2p1_0796F.1_g219140 Hydrangea macrophylla
HPP92_004767 Vanilla planifolia
Hund00144 Selenicereus undatus
Hund06333 Selenicereus undatus
Hund09393 Selenicereus undatus
Hund13342 Selenicereus undatus
Hund25982 Selenicereus undatus
Lalb_Chr06g0165491 Lupinus albus
Lj5A213T83 Lonicera japonica
Lj5g0015320 Lotus japonicus
Lsat_1_v5_gn_7_86320 Lactuca sativa
Manes.04G059624 Manihot esculenta
Manes.07G069700 Manihot esculenta
Mapoly0030s0013 Marchantia polymorpha
MBI16_g34668_MAGBIO Magnolia biondii
MD05G1088200 Malus domestica
MD05G1088300 Malus domestica
Medtr1g107485 Medicago truncatula
MELO3C019541.2 Cucumis melo
Migut.B00382 Erythranthe guttata
MSTRG.20181 Avicennia marina
MSTRG.5346 Avicennia marina
Nitab4.5_0001539g0020 Nicotiana tabacum
Nitab4.5_0001596g0010 Nicotiana tabacum
Nn5g30409 Nelumbo nucifera
Oeu037243.1 Olea europaea
Oeu044290.1 Olea europaea
Os09g0109800 Oryza sativa ssp. japonica
Peaxi162Scf00152g00232 Petunia axillaris
PGR042G2277 Punica granatum
PGSC0003DMG400022932 Solanum tuberosum
Phvul.007G039000 Phaseolus vulgaris
Potri.001G301000 Populus trichocarpa
Potri.009G096700 Populus trichocarpa
Pp3c12_4070 Physcomitrium patens
Pp3c4_21490 Physcomitrium patens
Prupe.8G134200 Prunus persica
Psat6g219600 Pisum sativum
PSO541G5343 Papaver somniferum
PSO675G3501 Papaver somniferum
QL11p033970 Quercus lobata
QL11p034002 Quercus lobata
QL11p034034 Quercus lobata
RcHm_v2.0_Chr4g0433471 Rosa chinensis
RcHm_v2.0_Chr6g0255461 Rosa chinensis
RcHm_v2.0_Chr6g0255471 Rosa chinensis
RcHm_v2.0_Chr6g0255491 Rosa chinensis
RcHm_v2.0_Chr6g0255511 Rosa chinensis
RcHm_v2.0_Chr6g0255521 Rosa chinensis
Rhsim05G0087800 Rhododendron simsii
Rhsim05G0087900 Rhododendron simsii
Sabra09G0074300 Salix brachista
Sabra16G0189200 Salix brachista
SalBow6G5260 Salvia bowleyana
Sc17g0003000 Simmondsia chinensis
Sed0014414 Sechium edule
SEGI_32792 Sequoiadendron giganteum
SEGI_35862 Sequoiadendron giganteum
SEGI_39751 Sequoiadendron giganteum
SEGI_40595 Sequoiadendron giganteum
SGA_v2.0_scaffold225G43075 Striga asiatica
SMO199G0121 Selaginella moellendorffii
SMO347G0195 Selaginella moellendorffii
Solyc11g044540.2 Solanum lycopersicum
Sopen11g020160 Solanum pennellii
Sp3g17540 Schrenkiella parvula
TAR376G0033 Trochodendron aralioides
TAR628G1050 Trochodendron aralioides
THA.LOC104812909 Tarenaya hassleriana
Thecc.02G107000 Theobroma cacao
Thhalv10012248m.g Eutrema salsugineum
Thhalv10020369m.g Eutrema salsugineum
TPR.G13858 Trifolium pratense
TPR.G27121 Trifolium pratense
TWI79G0140 Tripterygium wilfordii
unitig_37.g12803 Utricularia gibba
vmacro19521 Vaccinium macrocarpon
vmacro23441 Vaccinium macrocarpon
VMungo0647G0093 Vigna mungo
VMungo0720G0258 Vigna mungo
VMungo0720G0416 Vigna mungo
VMungo0720G2067 Vigna mungo
VMungo1215G0907 Vigna mungo
Zm00001eb307330 Zea mays

User provided reference genes

Program Settings