Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p12090 Brassica napus
A10p15620 Brassica napus
Aa31LG4G16110 Aethionema arabicum
Actinidia11575 Actinidia chinensis
Actinidia29092 Actinidia chinensis
Ah.12g058720 Amaranthus hybridus
AL5G26480 Arabidopsis lyrata
AL8G34910 Arabidopsis lyrata
Aqoxy2G00865 Aquilegia oxysepala
Aqoxy4G02534 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea
AT3G47300 Arabidopsis thaliana
AT5G58640 Arabidopsis thaliana
ATR0681G135 Amborella trichopoda
Atru.chr3.4194 Acer truncatum
Atru.chr8.2258 Acer truncatum
AUR62030494 Chenopodium quinoa
AUR62030801 Chenopodium quinoa
BcaB01g01543 Brassica carinata
BcaB01g04503 Brassica carinata
BcaB06g29604 Brassica carinata
BcaB07g33953 Brassica carinata
BcaC02g09351 Brassica carinata
BcaC04g19825 Brassica carinata
BolC3t13864H Brassica oleracea
BolC9t57922H Brassica oleracea
BraA03t10521Z Brassica rapa
BraA10t43671Z Brassica rapa
C01p08370 Brassica napus
C03p14190 Brassica napus
C07p23840 Brassica napus
C09p50720 Brassica napus
CAN.G740.4 Capsicum annuum
CANSAT54G2318 Cannabis sativa
CARHR272500 Cardamine hirsuta
Carub.0005s1339 Capsella rubella
Carub.0008s1926 Capsella rubella
Ca_05615_v3 Cicer arietinum L.
Ca_20283_v3 Cicer arietinum L.
CBR_g34707 Chara braunii
Cc06_g01230 Coffea canephora
CDE03G0191 Ceratophyllum demersum
CDE04G2602 Ceratophyllum demersum
Cfa011711 Carpinus fangiana
Cfa017194 Carpinus fangiana
Ciclev10013383m.g Citrus clementina
Ciclev10029239m.g Citrus clementina
CiPaw.09G210500 Carya illinoinensis
CiPaw.14G058300 Carya illinoinensis
ClCG02G019500 Citrullus lanatus
ClCG10G022210 Citrullus lanatus
COL.COLO4_19178 Corchorus olitorius
Cpa.g.sc112.1 Carica papaya
Cre14.g616950 Chlamydomonas reinhardtii
CsaV3_3G033680 Cucumis sativus L.
CsaV3_6G016170 Cucumis sativus L.
CSS0009567 Camellia sinensis var. sinensis
CSS0016200 Camellia sinensis var. sinensis
DCAR_018696 Daucus carota
Dinv03100 Davidia involucrata
Dinv14509 Davidia involucrata
Duzib168G0285 Durio zibethinus
EL10Ac5g12549 Beta vulgaris
Eucgr.B02246 Eucalyptus grandis
FAN02G4186 Fragaria x ananassa
FAN05G2859 Fragaria x ananassa
FAN09G2001 Fragaria x ananassa
FAN11G2604 Fragaria x ananassa
FAN14G0231 Fragaria x ananassa
FAN14G3883 Fragaria x ananassa
FAN16G0525 Fragaria x ananassa
FAN21G1905 Fragaria x ananassa
FAN25G1984 Fragaria x ananassa
FvH4_3g38810 Fragaria vesca
FvH4_6g11300 Fragaria vesca
Glyma.02G227600 Glycine max
Glyma.03G056500 Glycine max
Glyma.14G194500 Glycine max
Gohir.A09G089600 Gossypium hirsutum
Gohir.D09G089700 Gossypium hirsutum
Gorai.006G105900 Gossypium raimondii
GSVIVG01011172001 Vitis vinifera
GSVIVG01030787001 Vitis vinifera
GSVIVG01032286001 Vitis vinifera
GSVIVG01032328001 Vitis vinifera
HanXRQChr13g0406611 Helianthus annuus
Haze_21017 Corylus avellana
Haze_24342 Corylus avellana
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla
HPP92_017934 Vanilla planifolia
Hund14286 Selenicereus undatus
Lalb_Chr04g0252201 Lupinus albus
Lalb_Chr07g0193651 Lupinus albus
Lalb_Chr10g0103381 Lupinus albus
Lj2C73G10 Lonicera japonica
Lj3A951T30 Lonicera japonica
Lj3g0002740 Lotus japonicus
LjContig00155g0022980 Lotus japonicus
Lsat_1_v5_gn_5_149460 Lactuca sativa
Manes.01G160400 Manihot esculenta
Manes.09G107600 Manihot esculenta
MBI15_g14842_MAGBIO Magnolia biondii
MCO12G475 Micromonas commoda
MD03G1067200 Malus domestica
MD03G1067500 Malus domestica
MD03G1067600 Malus domestica
MD04G1155500 Malus domestica
MD11G1071900 Malus domestica
MD12G1168700 Malus domestica
Medtr4g015610 Medicago truncatula
Medtr5g071240 Medicago truncatula
MELO3C009158.2 Cucumis melo
Migut.J00152 Erythranthe guttata
MSTRG.19005 Avicennia marina
Nitab4.5_0000261g0010 Nicotiana tabacum
Nitab4.5_0002020g0030 Nicotiana tabacum
Nn2g10866 Nelumbo nucifera
Os01g0832200 Oryza sativa ssp. japonica
Os05g0467300 Oryza sativa ssp. japonica
Peaxi162Scf00170g00124 Petunia axillaris
PGR102G2658 Punica granatum
PGSC0003DMG400004449 Solanum tuberosum
Phvul.008G260400 Phaseolus vulgaris
Phvul.010G076100 Phaseolus vulgaris
Potri.001G253000 Populus trichocarpa
Potri.009G047000 Populus trichocarpa
Potri.016G117600 Populus trichocarpa
PRCOL_00001680 Prasinoderma coloniale
Prupe.6G055700 Prunus persica
Prupe.6G279000 Prunus persica
Psat2g057600 Pisum sativum
Psat7g245760 Pisum sativum
Psat7g245800 Pisum sativum
PSO339G1238 Papaver somniferum
PSO384G4313 Papaver somniferum
QL01p038648 Quercus lobata
QL07p035253 Quercus lobata
RcHm_v2.0_Chr3g0462841 Rosa chinensis
RcHm_v2.0_Chr5g0070001 Rosa chinensis
Rhsim05G0216800 Rhododendron simsii
Sabra09G0034400 Salix brachista
Sabra16G0113700 Salix brachista
Sc22g0002520 Simmondsia chinensis
Sed0020125 Sechium edule
Sed0021100 Sechium edule
SEGI_37457 Sequoiadendron giganteum
SGA_v2.0_scaffold75G25021 Striga asiatica
SHI31752 Sapria himalayana
SMO358G0328 Selaginella moellendorffii
Solyc09g005580.4 Solanum lycopersicum
Solyc09g005590.3 Solanum lycopersicum
Sopen09g001490 Solanum pennellii
Sp5g14550 Schrenkiella parvula
Sp6g20340 Schrenkiella parvula
TAR633G0450 Trochodendron aralioides
Thecc.09G299600 Theobroma cacao
Thhalv10010643m.g Eutrema salsugineum
Thhalv10014590m.g Eutrema salsugineum
TPR.G13346 Trifolium pratense
TPR.G34577 Trifolium pratense
TWI31G0142 Tripterygium wilfordii
unitig_578.g15899 Utricularia gibba
vmacro20289 Vaccinium macrocarpon
VMungo0331G2046 Vigna mungo
VMungo0647G1724 Vigna mungo
Zm00001eb351750 Zea mays
Zm00001eb368380 Zea mays

User provided reference genes

Program Settings