Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p02190 Brassica napus
A03p64470 Brassica napus
A08p22370 Brassica napus
Aa31LG6G13530 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.5399 Anthoceros agrestis
Actinidia00515 Actinidia chinensis
Actinidia22486 Actinidia chinensis
Ah.01g019590 Amaranthus hybridus
AL7G14290 Arabidopsis lyrata
Aqoxy6G01036 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4DKU0T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.65EKU6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QP0UED Arachis hypogaea
AT4G36720 Arabidopsis thaliana
ATR0733G067 Amborella trichopoda
Atru.chr3.535 Acer truncatum
Atru.chr5.2955 Acer truncatum
AUR62011354 Chenopodium quinoa
AUR62016708 Chenopodium quinoa
BcaB03g12374 Brassica carinata
BcaC01g00446 Brassica carinata
BcaNung00706 Brassica carinata
BcaNung04434 Brassica carinata
BolC3t20246H Brassica oleracea
BolC7t46611H Brassica oleracea
BraA08t34194Z Brassica rapa
C01p02380 Brassica napus
C03p79930 Brassica napus
C07p61890 Brassica napus
CAN.G1.45 Capsicum annuum
CAN.G352.59 Capsicum annuum
CANSAT01G2667 Cannabis sativa
CARHR245070 Cardamine hirsuta
Carub.0007s0360 Capsella rubella
Cc02_g17820 Coffea canephora
CDE04G1766 Ceratophyllum demersum
Cfa004279 Carpinus fangiana
Ciclev10026788m.g Citrus clementina
Ciclev10029342m.g Citrus clementina
Ciclev10033473m.g Citrus clementina
CiPaw.01G034600 Carya illinoinensis
ClCG01G019370 Citrullus lanatus
COL.COLO4_22117 Corchorus olitorius
Cpa.g.sc158.6 Carica papaya
Cpa.g.sc62.117 Carica papaya
CsaV3_6G046090 Cucumis sativus L.
CSS0025580 Camellia sinensis var. sinensis
CSS0034503 Camellia sinensis var. sinensis
DCAR_017235 Daucus carota
DCAR_022101 Daucus carota
Dinv23548 Davidia involucrata
Duzib187G0328 Durio zibethinus
Duzib248G0461 Durio zibethinus
EL10Ac9g21751 Beta vulgaris
Eucgr.I01252 Eucalyptus grandis
FAN15G1236 Fragaria x ananassa
FAN19G3158 Fragaria x ananassa
FAN20G0668 Fragaria x ananassa
FAN23G0822 Fragaria x ananassa
FAN24G1607 Fragaria x ananassa
FAN26G1434 Fragaria x ananassa
FAN28G1223 Fragaria x ananassa
FvH4_1g13870 Fragaria vesca
FvH4_2g08300 Fragaria vesca
Glyma.01G177300 Glycine max
Glyma.11G065100 Glycine max
Glyma.11G119700 Glycine max
Glyma.12G044900 Glycine max
Glyma.19G024600 Glycine max
Gohir.A03G179700 Gossypium hirsutum
Gohir.A04G117200 Gossypium hirsutum
Gohir.A10G094600 Gossypium hirsutum
Gohir.D02G202933 Gossypium hirsutum
Gohir.D04G158900 Gossypium hirsutum
Gohir.D10G093300 Gossypium hirsutum
Gorai.005G228600 Gossypium raimondii
Gorai.011G102500 Gossypium raimondii
Gorai.012G146300 Gossypium raimondii
GSVIVG01019007001 Vitis vinifera
GSVIVG01019008001 Vitis vinifera
GSVIVG01031926001 Vitis vinifera
HanXRQChr04g0127871 Helianthus annuus
HanXRQChr08g0216581 Helianthus annuus
Haze_15121 Corylus avellana
Hma1.2p1_0066F.1_g036680 Hydrangea macrophylla
Hma1.2p1_0652F.1_g195840 Hydrangea macrophylla
Hma1.2p1_3707F.1_g337330 Hydrangea macrophylla
HPP92_007875 Vanilla planifolia
HPP92_007890 Vanilla planifolia
Hund00289 Selenicereus undatus
Lalb_Chr05g0212951 Lupinus albus
Lj2g0019230 Lotus japonicus
Lj5A200T57 Lonicera japonica
Lsat_1_v5_gn_7_89700 Lactuca sativa
Lsat_1_v5_gn_9_109341 Lactuca sativa
Lsat_1_v5_gn_9_109361 Lactuca sativa
Manes.13G137000 Manihot esculenta
Manes.15G167200 Manihot esculenta
Mapoly0016s0196 Marchantia polymorpha
Mapoly0166s0019 Marchantia polymorpha
MBI16_g35701_MAGBIO Magnolia biondii
MD10G1080600 Malus domestica
MD15G1266600 Malus domestica
Medtr5g019720 Medicago truncatula
MELO3C007812.2 Cucumis melo
Migut.B00258 Erythranthe guttata
MSTRG.20103 Avicennia marina
Nitab4.5_0001311g0020 Nicotiana tabacum
Nitab4.5_0001361g0200 Nicotiana tabacum
Nitab4.5_0005152g0080 Nicotiana tabacum
Nitab4.5_0011188g0010 Nicotiana tabacum
Nn1g05079 Nelumbo nucifera
Nn5g29529 Nelumbo nucifera
Nn5g29530 Nelumbo nucifera
Oeu014332.1 Olea europaea
Os07g0568400 Oryza sativa ssp. japonica
Peaxi162Scf00003g01333 Petunia axillaris
Peaxi162Scf00089g00243 Petunia axillaris
PGR119G1684 Punica granatum
PGSC0003DMG400033909 Solanum tuberosum
PGSC0003DMG401015201 Solanum tuberosum
PGSC0003DMG402015201 Solanum tuberosum
Phvul.002G027400 Phaseolus vulgaris
Phvul.011G046900 Phaseolus vulgaris
Potri.007G029300 Populus trichocarpa
Potri.009G113400 Populus trichocarpa
Pp3c2_21660 Physcomitrium patens
PRCOL_00006817 Prasinoderma coloniale
Prupe.7G150800 Prunus persica
Prupe.8G101900 Prunus persica
Psat2g161160 Pisum sativum
PSO541G5216 Papaver somniferum
PSO675G6408 Papaver somniferum
QL06p045366 Quercus lobata
QL11p042830 Quercus lobata
RcHm_v2.0_Chr2g0102181 Rosa chinensis
RcHm_v2.0_Chr6g0263171 Rosa chinensis
Rhsim11G0174000 Rhododendron simsii
Sabra07G0025200 Salix brachista
Sabra09G0086700 Salix brachista
SalBow6G5424 Salvia bowleyana
SalBow6G6921 Salvia bowleyana
Sc18g0004640 Simmondsia chinensis
Sed0010733 Sechium edule
Sed0013019 Sechium edule
SEGI_19820 Sequoiadendron giganteum
SEGI_30210 Sequoiadendron giganteum
SEGI_34010 Sequoiadendron giganteum
SGA_v2.0_scaffold32G13150 Striga asiatica
SMO114G0054 Selaginella moellendorffii
SMO140G0008 Selaginella moellendorffii
SMO215G0008 Selaginella moellendorffii
Solyc03g110920.2 Solanum lycopersicum
Solyc10g051300.2 Solanum lycopersicum
Sopen03g030110 Solanum pennellii
Sopen10g022980 Solanum pennellii
Sp7g34380 Schrenkiella parvula
TAR376G0015 Trochodendron aralioides
TAR628G0800 Trochodendron aralioides
THA.LOC104807547 Tarenaya hassleriana
Thecc.01G039800 Theobroma cacao
Thecc.02G122900 Theobroma cacao
Thhalv10026250m.g Eutrema salsugineum
TPR.G18804 Trifolium pratense
TWI75G0712 Tripterygium wilfordii
TWI75G1726 Tripterygium wilfordii
vmacro02133 Vaccinium macrocarpon
vmacro19436 Vaccinium macrocarpon
VMungo1127G1479 Vigna mungo
VMungo1215G0182 Vigna mungo
Zm00001eb148430 Zea mays

User provided reference genes

Program Settings