Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A08p35950 Brassica napus
A10p05130 Brassica napus
Aa31LG1G7530 Aethionema arabicum
Actinidia11177 Actinidia chinensis
Ah.01g004740 Amaranthus hybridus
Ah.01g016090 Amaranthus hybridus
AL1G16480 Arabidopsis lyrata
Aqoxy1G01993 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.A5IPPM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.E1YPH0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EL27YX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HC0VLG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N5266S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PX7MES Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.S8R0TP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X0GQC6 Arachis hypogaea
AT1G06470 Arabidopsis thaliana
ATR0012G048 Amborella trichopoda
ATR0857G001 Amborella trichopoda
Atru.chr6.3571 Acer truncatum
AUR62031790 Chenopodium quinoa
BcaB02g06797 Brassica carinata
BcaB03g13416 Brassica carinata
BcaC07g36811 Brassica carinata
BcaC07g36812 Brassica carinata
BolC5t29244H Brassica oleracea
BolC8t47054H Brassica oleracea
BraA08t35503Z Brassica rapa
BraA10t42778Z Brassica rapa
C05p04720 Brassica napus
C08p02610 Brassica napus
CAN.G486.15 Capsicum annuum
CAN.G803.15 Capsicum annuum
CAN.G803.16 Capsicum annuum
CANSAT64G1854 Cannabis sativa
CARHR006080 Cardamine hirsuta
Carub.0001s0583 Capsella rubella
CDE09G0584 Ceratophyllum demersum
Ciclev10017482m.g Citrus clementina
Ciclev10018149m.g Citrus clementina
CiPaw.04G134900 Carya illinoinensis
ClCG09G020800 Citrullus lanatus
COL.COLO4_33652 Corchorus olitorius
Cre07.g330850 Chlamydomonas reinhardtii
CsaV3_6G037880 Cucumis sativus L.
CSS0019423 Camellia sinensis var. sinensis
CSS0026162 Camellia sinensis var. sinensis
CSS0038404 Camellia sinensis var. sinensis
DCAR_010149 Daucus carota
DCAR_014033 Daucus carota
Dinv03089 Davidia involucrata
Dinv11422 Davidia involucrata
Duzib147G1030 Durio zibethinus
Duzib264G0691 Durio zibethinus
ECA233G4030 Erigeron canadensis
ECA234G3208 Erigeron canadensis
EL10Ac9g21032 Beta vulgaris
Eucgr.A01947 Eucalyptus grandis
FAN02G0254 Fragaria x ananassa
FAN05G5128 Fragaria x ananassa
FAN09G0194 Fragaria x ananassa
FAN14G3113 Fragaria x ananassa
FvH4_6g27881 Fragaria vesca
FvH4_6g27890 Fragaria vesca
Glyma.08G312900 Glycine max
Glyma.09G101300 Glycine max
Glyma.18G102500 Glycine max
Gohir.A05G376700 Gossypium hirsutum
Gohir.A11G059900 Gossypium hirsutum
Gohir.D04G039266 Gossypium hirsutum
Gohir.D11G064000 Gossypium hirsutum
Gorai.007G069200 Gossypium raimondii
Gorai.012G044300 Gossypium raimondii
GSVIVG01020780001 Vitis vinifera
HanXRQChr01g0028621 Helianthus annuus
HanXRQChr04g0105921 Helianthus annuus
HanXRQChr04g0125851 Helianthus annuus
HanXRQChr12g0367511 Helianthus annuus
Haze_13436 Corylus avellana
Hma1.2p1_0178F.1_g078380 Hydrangea macrophylla
HPP92_000571 Vanilla planifolia
HPP92_009031 Vanilla planifolia
Hund00818 Selenicereus undatus
Hund07729 Selenicereus undatus
Lalb_Chr10g0106881 Lupinus albus
Lalb_Chr15g0080421 Lupinus albus
Lj1C629G7 Lonicera japonica
Lj6g0002139 Lotus japonicus
Lsat_1_v5_gn_4_26681 Lactuca sativa
Lsat_1_v5_gn_8_31821 Lactuca sativa
Manes.01G129950 Manihot esculenta
Manes.02G087500 Manihot esculenta
Mapoly0035s0035 Marchantia polymorpha
Mapoly0038s0060 Marchantia polymorpha
MBI06_g18691_MAGBIO Magnolia biondii
MCO15G049 Micromonas commoda
MD09G1233800 Malus domestica
MD17G1230200 Malus domestica
Medtr8g016090 Medicago truncatula
MELO3C014450.2 Cucumis melo
Migut.H02117 Erythranthe guttata
Migut.M00208 Erythranthe guttata
Nitab4.5_0000990g0060 Nicotiana tabacum
Nitab4.5_0003133g0050 Nicotiana tabacum
Nitab4.5_0003479g0010 Nicotiana tabacum
Nitab4.5_0005259g0030 Nicotiana tabacum
Nn3g21103 Nelumbo nucifera
Nn6g34497 Nelumbo nucifera
Oeu028661.1 Olea europaea
Oeu032129.1 Olea europaea
Os01g0749900 Oryza sativa ssp. japonica
Os06g0153200 Oryza sativa ssp. japonica
Peaxi162Scf00154g01022 Petunia axillaris
Peaxi162Scf00807g00047 Petunia axillaris
PGR042G1715 Punica granatum
PGSC0003DMG400007799 Solanum tuberosum
Phvul.006G038200 Phaseolus vulgaris
Potri.006G278700 Populus trichocarpa
Pp3c13_2890 Physcomitrium patens
Pp3c2_29630 Physcomitrium patens
Pp3c3_5740 Physcomitrium patens
PRCOL_00000399 Prasinoderma coloniale
PRCOL_00002587 Prasinoderma coloniale
Prupe.3G108900 Prunus persica
Psat4g191560 Pisum sativum
PSO541G2160 Papaver somniferum
PSO675G6070 Papaver somniferum
QL08p042726 Quercus lobata
QL08p042731 Quercus lobata
QL08p042808 Quercus lobata
QL08p042883 Quercus lobata
QL08p042899 Quercus lobata
RcHm_v2.0_Chr2g0131291 Rosa chinensis
RcHm_v2.0_Chr2g0131361 Rosa chinensis
Rhsim06G0124300 Rhododendron simsii
Sabra06G0216200 Salix brachista
SalBow1G0209 Salvia bowleyana
SalBow1G6942 Salvia bowleyana
SalBow6G2076 Salvia bowleyana
SalBow7G1867 Salvia bowleyana
SalBow7G2879 Salvia bowleyana
SalBow8G2638 Salvia bowleyana
Sc12g0003810 Simmondsia chinensis
Sc21g0004310 Simmondsia chinensis
Sed0017214 Sechium edule
SEGI_15129 Sequoiadendron giganteum
SGA_v2.0_scaffold46G17443 Striga asiatica
SGA_v2.0_scaffold9G04867 Striga asiatica
SMO358G0570 Selaginella moellendorffii
Solyc07g055700.2 Solanum lycopersicum
Solyc12g010990.3 Solanum lycopersicum
Sopen07g029060 Solanum pennellii
Sopen12g006350 Solanum pennellii
Sp1g05230 Schrenkiella parvula
TAR030G0002 Trochodendron aralioides
THA.LOC104800830 Tarenaya hassleriana
Thecc.01G156100 Theobroma cacao
Thecc.07G168800 Theobroma cacao
Thhalv10007752m.g Eutrema salsugineum
TPR.G22233 Trifolium pratense
unitig_62.g23112 Utricularia gibba
unitig_62.g23113 Utricularia gibba
vmacro12418 Vaccinium macrocarpon
vmacro12419 Vaccinium macrocarpon
VMungo0540G1454 Vigna mungo
Zm00001eb153320 Zea mays
Zm00001eb270990 Zea mays
Zm00001eb317340 Zea mays
Zm00001eb358520 Zea mays
Zm00001eb370980 Zea mays
Zm00001eb376680 Zea mays

User provided reference genes

Program Settings