Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p39790 Brassica napus
A09p63460 Brassica napus
Aa31LG1G1770 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis
Actinidia01360 Actinidia chinensis
Actinidia08126 Actinidia chinensis
Actinidia15108 Actinidia chinensis
Actinidia26737 Actinidia chinensis
Actinidia37446 Actinidia chinensis
Ah.02g130260 Amaranthus hybridus
Ah.03g133390 Amaranthus hybridus
Ah.08g219390 Amaranthus hybridus
AL1G24680 Arabidopsis lyrata
Aqoxy3G01258 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea
AT1G13030 Arabidopsis thaliana
ATR0122G036 Amborella trichopoda
Atru.chr11.2164 Acer truncatum
AUR62005505 Chenopodium quinoa
AUR62024236 Chenopodium quinoa
BcaB08g34232 Brassica carinata
BcaC05g25061 Brassica carinata
BcaC05g25092 Brassica carinata
BcaC05g25410 Brassica carinata
BolC2t12020H Brassica oleracea
BolC5t29741H Brassica oleracea
BolC5t29747H Brassica oleracea
BolC8t52227H Brassica oleracea
BraA09t41696Z Brassica rapa
C05p09990 Brassica napus
C08p46920 Brassica napus
CAN.G272.6 Capsicum annuum
CAN.G979.7 Capsicum annuum
CANSAT01G3092 Cannabis sativa
CANSAT56G3164 Cannabis sativa
CANSAT56G4040 Cannabis sativa
CARHR013360 Cardamine hirsuta
Carub.0001s1278 Capsella rubella
Ca_25135_v3 Cicer arietinum L.
Cc11_g15970 Coffea canephora
CDE09G0121 Ceratophyllum demersum
Cfa009235 Carpinus fangiana
Ciclev10030867m.g Citrus clementina
CiPaw.05G178200 Carya illinoinensis
CiPaw.06G066400 Carya illinoinensis
ClCG05G025880 Citrullus lanatus
ClCG08G017620 Citrullus lanatus
COL.COLO4_23486 Corchorus olitorius
Cre13.g592400 Chlamydomonas reinhardtii
CsaV3_2G025020 Cucumis sativus L.
CsaV3_2G034300 Cucumis sativus L.
CsaV3_5G030980 Cucumis sativus L.
CSS0011275 Camellia sinensis var. sinensis
CSS0023851 Camellia sinensis var. sinensis
DCAR_007043 Daucus carota
DCAR_026503 Daucus carota
Dinv14739 Davidia involucrata
Dinv15208 Davidia involucrata
Duzib268G0184 Durio zibethinus
ECA246G3212 Erigeron canadensis
EL10Ac6g13879 Beta vulgaris
Eucgr.H02474 Eucalyptus grandis
FAN07G2897 Fragaria x ananassa
FAN12G3846 Fragaria x ananassa
FAN17G0775 Fragaria x ananassa
FAN22G2105 Fragaria x ananassa
FvH4_4g25440 Fragaria vesca
Glyma.11G243800 Glycine max
Glyma.18G013300 Glycine max
Gohir.A01G158700 Gossypium hirsutum
Gohir.D01G152000 Gossypium hirsutum
Gorai.002G188300 Gossypium raimondii
GSVIVG01000557001 Vitis vinifera
HanXRQChr11g0329171 Helianthus annuus
HanXRQChr12g0371721 Helianthus annuus
HanXRQChr17g0539921 Helianthus annuus
Haze_12270 Corylus avellana
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla
Hma1.2p1_0900F.1_g234620 Hydrangea macrophylla
Hma1.2p1_0900F.1_g234630 Hydrangea macrophylla
HPP92_011276 Vanilla planifolia
HPP92_011297 Vanilla planifolia
HPP92_015914 Vanilla planifolia
HPP92_015941 Vanilla planifolia
HPP92_024299 Vanilla planifolia
Hund06041 Selenicereus undatus
Hund25400 Selenicereus undatus
Lalb_Chr08g0230891 Lupinus albus
Lalb_Chr23g0277631 Lupinus albus
Lj2C1008G14 Lonicera japonica
Lj2C1008T10 Lonicera japonica
Lj3A1060T72 Lonicera japonica
Lj3A62T27 Lonicera japonica
Lj3C53G2 Lonicera japonica
Lj3P1060T39 Lonicera japonica
Lj4A466T15 Lonicera japonica
Lj6g0012261 Lotus japonicus
Lsat_1_v5_gn_3_30221 Lactuca sativa
Lsat_1_v5_gn_8_152820 Lactuca sativa
Manes.12G021100 Manihot esculenta
Manes.13G021500 Manihot esculenta
Mapoly0010s0205 Marchantia polymorpha
MD13G1102900 Malus domestica
MD16G1103100 Malus domestica
Medtr3g086550 Medicago truncatula
MELO3C010699.2 Cucumis melo
MELO3C011937.2 Cucumis melo
Migut.H02123 Erythranthe guttata
Migut.K00616 Erythranthe guttata
Nitab4.5_0000524g0060 Nicotiana tabacum
Nitab4.5_0001978g0040 Nicotiana tabacum
Nn3g16670 Nelumbo nucifera
Oeu057548.1 Olea europaea
Oeu059775.2 Olea europaea
Os12g0288600 Oryza sativa ssp. japonica
Os12g0288801 Oryza sativa ssp. japonica
Peaxi162Scf00067g00115 Petunia axillaris
Peaxi162Scf00117g00212 Petunia axillaris
Peaxi162Scf00128g00449 Petunia axillaris
PGR042G2157 Punica granatum
PGR119G0183 Punica granatum
PGSC0003DMG400025149 Solanum tuberosum
Phvul.001G255700 Phaseolus vulgaris
Potri.008G185100 Populus trichocarpa
Potri.010G048700 Populus trichocarpa
Pp3c16_2520 Physcomitrium patens
Pp3c1_31740 Physcomitrium patens
Pp3c4_25420 Physcomitrium patens
Prupe.1G242900 Prunus persica
Psat5g091840 Pisum sativum
PSO478G3171 Papaver somniferum
QL03p056879 Quercus lobata
RcHm_v2.0_Chr4g0432751 Rosa chinensis
Rhsim12G0039400 Rhododendron simsii
Rhsim12G0108400 Rhododendron simsii
Sabra08G0140100 Salix brachista
Sabra10G0020400 Salix brachista
SalBow2G2073 Salvia bowleyana
Sc02g0003070 Simmondsia chinensis
Sc26g0001570 Simmondsia chinensis
Sed0006330 Sechium edule
Sed0015104 Sechium edule
Sed0023093 Sechium edule
SEGI_13723 Sequoiadendron giganteum
SGA_v2.0_scaffold476G52145 Striga asiatica
SHI17819 Sapria himalayana
SHI17823 Sapria himalayana
SHI17827 Sapria himalayana
SHI17828 Sapria himalayana
Solyc02g067090.4 Solanum lycopersicum
Solyc05g013740.3 Solanum lycopersicum
Sopen02g016280 Solanum pennellii
Sopen05g008660 Solanum pennellii
Sp1g11580 Schrenkiella parvula
TAR374G1154 Trochodendron aralioides
TAR622G0947 Trochodendron aralioides
THA.LOC104805277 Tarenaya hassleriana
Thecc.02G263400 Theobroma cacao
Thhalv10007108m.g Eutrema salsugineum
TPR.G30525 Trifolium pratense
TWI18G0097 Tripterygium wilfordii
TWI36G0458 Tripterygium wilfordii
unitig_22.g6943 Utricularia gibba
vmacro01117 Vaccinium macrocarpon
vmacro16177 Vaccinium macrocarpon
VMungo1383G0113 Vigna mungo
Zm00001eb084730 Zea mays
Zm00001eb421500 Zea mays

User provided reference genes

Program Settings