Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p46950 Brassica napus
A09p07290 Brassica napus
Aa31LG11G2070 Aethionema arabicum
AL8G38000 Arabidopsis lyrata
Aqoxy3G03505 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.JX1FK0 Arachis hypogaea
AT5G61340 Arabidopsis thaliana
ATR0730G119 Amborella trichopoda
Atru.chr8.335 Acer truncatum
Atru.chr9.325 Acer truncatum
BcaB04g19907 Brassica carinata
BcaB07g29822 Brassica carinata
BcaC03g18095 Brassica carinata
BcaC04g23456 Brassica carinata
BolC7t45022H Brassica oleracea
BraA02t09111Z Brassica rapa
BraA03t13814Z Brassica rapa
C07p44990 Brassica napus
C09p08150 Brassica napus
CANSAT80G2067 Cannabis sativa
CARHR275100 Cardamine hirsuta
Carub.0008s2201 Capsella rubella
Ca_13877_v3 Cicer arietinum L.
Ca_21804_v3 Cicer arietinum L.
Cc04_g14350 Coffea canephora
CDE04G1821 Ceratophyllum demersum
CDE07G1350 Ceratophyllum demersum
Cfa019278 Carpinus fangiana
Ciclev10020945m.g Citrus clementina
CiPaw.03G021500 Carya illinoinensis
CiPaw.11G047700 Carya illinoinensis
CiPaw.12G011700 Carya illinoinensis
ClCG04G012070 Citrullus lanatus
ClCG06G015980 Citrullus lanatus
COL.COLO4_00682 Corchorus olitorius
COL.COLO4_12233 Corchorus olitorius
Cpa.g.sc13.300 Carica papaya
CsaV3_1G002580 Cucumis sativus L.
CsaV3_1G005700 Cucumis sativus L.
CSS0014802 Camellia sinensis var. sinensis
CSS0014968 Camellia sinensis var. sinensis
CSS0037629 Camellia sinensis var. sinensis
CSS0047924 Camellia sinensis var. sinensis
DCAR_016583 Daucus carota
DCAR_021516 Daucus carota
DCAR_026035 Daucus carota
Dinv10661 Davidia involucrata
Dinv38750 Davidia involucrata
Duzib068G1131 Durio zibethinus
Duzib147G1274 Durio zibethinus
Duzib205G1783 Durio zibethinus
Duzib264G0571 Durio zibethinus
EL10Ac5g11067 Beta vulgaris
Eucgr.B00548 Eucalyptus grandis
Eucgr.I02003 Eucalyptus grandis
Eucgr.K02492 Eucalyptus grandis
FAN08G0374 Fragaria x ananassa
FAN13G1369 Fragaria x ananassa
FAN18G2014 Fragaria x ananassa
FvH4_5g14500 Fragaria vesca
Glyma.04G165800 Glycine max
Glyma.05G024600 Glycine max
Glyma.06G196700 Glycine max
Glyma.17G102700 Glycine max
Gohir.A07G070400 Gossypium hirsutum
Gohir.A11G032333 Gossypium hirsutum
Gohir.A11G032400 Gossypium hirsutum
Gohir.A12G179600 Gossypium hirsutum
Gohir.D07G074900 Gossypium hirsutum
Gohir.D11G035700 Gossypium hirsutum
Gohir.D12G052650 Gossypium hirsutum
Gohir.D12G182200 Gossypium hirsutum
Gorai.001G079000 Gossypium raimondii
Gorai.007G038500 Gossypium raimondii
Gorai.007G226100 Gossypium raimondii
Gorai.008G195500 Gossypium raimondii
GSVIVG01011469001 Vitis vinifera
HanXRQChr04g0107211 Helianthus annuus
HanXRQChr09g0270961 Helianthus annuus
HanXRQChr16g0502591 Helianthus annuus
Haze_07654 Corylus avellana
Haze_14490 Corylus avellana
Hma1.2p1_0060F.1_g033460 Hydrangea macrophylla
Lalb_Chr07g0178191 Lupinus albus
Lalb_Chr13g0303071 Lupinus albus
Lj1g0017851 Lotus japonicus
Lj4g0011676 Lotus japonicus
Lj5P107T92 Lonicera japonica
Lj9A467G76 Lonicera japonica
Lsat_1_v5_gn_1_13901 Lactuca sativa
Lsat_1_v5_gn_4_109001 Lactuca sativa
Manes.01G100800 Manihot esculenta
Manes.02G049400 Manihot esculenta
Manes.06G089200 Manihot esculenta
Manes.14G082100 Manihot esculenta
MBI19_g43436_MAGBIO Magnolia biondii
MD06G1197900 Malus domestica
MD14G1205500 Malus domestica
Medtr3g037110 Medicago truncatula
Medtr4g109020 Medicago truncatula
MELO3C002001.2 Cucumis melo
MELO3C017194.2 Cucumis melo
Migut.D01757 Erythranthe guttata
Migut.I00216 Erythranthe guttata
MSTRG.11370 Avicennia marina
MSTRG.4442 Avicennia marina
Nitab4.5_0002756g0130 Nicotiana tabacum
Nn3g17343 Nelumbo nucifera
Oeu046997.1 Olea europaea
Oeu047272.1 Olea europaea
Oeu052462.1 Olea europaea
Os12g0507400 Oryza sativa ssp. japonica
Os12g0577200 Oryza sativa ssp. japonica
Peaxi162Scf00274g10024 Petunia axillaris
PGR004G1946 Punica granatum
PGR044G2522 Punica granatum
PGR083G0705 Punica granatum
PGSC0003DMG400024664 Solanum tuberosum
Phvul.003G187900 Phaseolus vulgaris
Phvul.009G184900 Phaseolus vulgaris
Potri.004G102800 Populus trichocarpa
Potri.012G068000 Populus trichocarpa
Potri.015G060900 Populus trichocarpa
Prupe.5G198800 Prunus persica
Psat4g049120 Pisum sativum
Psat5g199240 Pisum sativum
PSO017G6425 Papaver somniferum
PSO063G0630 Papaver somniferum
PSO063G7677 Papaver somniferum
PSO478G2558 Papaver somniferum
QL02p084965 Quercus lobata
QL10p017912 Quercus lobata
RcHm_v2.0_Chr7g0182161 Rosa chinensis
Rhsim08G0150900 Rhododendron simsii
Rhsim08G0151100 Rhododendron simsii
Rhsim08G0151200 Rhododendron simsii
Rhsim10G0035500 Rhododendron simsii
Sabra04G0077800 Salix brachista
Sabra15G0086100 Salix brachista
SalBow7G3788 Salvia bowleyana
Sc04g0002900 Simmondsia chinensis
Sed0006516 Sechium edule
Sed0010910 Sechium edule
Sed0015191 Sechium edule
SGA_v2.0_scaffold25G10938 Striga asiatica
SGA_v2.0_scaffold7G04046 Striga asiatica
Solyc03g115690.1 Solanum lycopersicum
Solyc06g069680.1 Solanum lycopersicum
Sopen03g034670 Solanum pennellii
Sopen06g026980 Solanum pennellii
Sp2g24550 Schrenkiella parvula
TAR369G0101 Trochodendron aralioides
TAR371G1138 Trochodendron aralioides
TAR626G1449 Trochodendron aralioides
TAR629G0233 Trochodendron aralioides
THA.LOC104801435 Tarenaya hassleriana
THA.LOC104818514 Tarenaya hassleriana
Thecc.03G094700 Theobroma cacao
Thecc.04G088100 Theobroma cacao
Thhalv10005448m.g Eutrema salsugineum
TPR.G2017 Trifolium pratense
TWI15G0089 Tripterygium wilfordii
TWI60G1703 Tripterygium wilfordii
TWI81G0628 Tripterygium wilfordii
unitig_26.g9653 Utricularia gibba
unitig_749.g13440 Utricularia gibba
unitig_749.g14136 Utricularia gibba
VMungo1215G0778 Vigna mungo
VMungo1309G2967 Vigna mungo
Zm00001eb029590 Zea mays
Zm00001eb136250 Zea mays
Zm00001eb264770 Zea mays

User provided reference genes

Program Settings