Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p19220 Brassica napus
A07p29490 Brassica napus
Aa31LG4G4540 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.3286 Anthoceros agrestis
Actinidia00358 Actinidia chinensis
Actinidia05939 Actinidia chinensis
Actinidia05940 Actinidia chinensis
Actinidia16124 Actinidia chinensis
Actinidia16125 Actinidia chinensis
Ah.11g047840 Amaranthus hybridus
AL2G34130 Arabidopsis lyrata
Aqoxy3G03641 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.9WPU3R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UN52J1 Arachis hypogaea
AT1G74250 Arabidopsis thaliana
ATR0064G035 Amborella trichopoda
ATR0064G087 Amborella trichopoda
ATR0064G112 Amborella trichopoda
Atru.chr9.431 Acer truncatum
AUR62008522 Chenopodium quinoa
AUR62021567 Chenopodium quinoa
BcaB05g24846 Brassica carinata
BcaC03g15492 Brassica carinata
BcaC03g15497 Brassica carinata
BcaC08g45598 Brassica carinata
BcaC08g46857 Brassica carinata
BolC2t09208H Brassica oleracea
BolC6t38462H Brassica oleracea
BraA02t06969Z Brassica rapa
BraA07t30587Z Brassica rapa
C02p31810 Brassica napus
C06p33480 Brassica napus
C06p48440 Brassica napus
CAN.G1228.28 Capsicum annuum
CANSAT80G2443 Cannabis sativa
CARHR067510 Cardamine hirsuta
Carub.0002s2104 Capsella rubella
Ca_21778_v3 Cicer arietinum L.
CBR_g40972 Chara braunii
Cc00_g07590 Coffea canephora
CDE04G1128 Ceratophyllum demersum
Cfa019327 Carpinus fangiana
Cfa025727 Carpinus fangiana
Ciclev10019373m.g Citrus clementina
CiPaw.11G052900 Carya illinoinensis
ClCG06G015670 Citrullus lanatus
COL.COLO4_06863 Corchorus olitorius
Cpa.g.sc94.52 Carica papaya
Cpa.g.sc94.53 Carica papaya
Cre02.g110250 Chlamydomonas reinhardtii
Cre05.g240650 Chlamydomonas reinhardtii
CsaV3_1G002890 Cucumis sativus L.
DCAR_023173 Daucus carota
Dinv22784 Davidia involucrata
Duzib205G0149 Durio zibethinus
ECA232G3573 Erigeron canadensis
EL10Ac5g11124 Beta vulgaris
Eucgr.B00587 Eucalyptus grandis
FAN02G1868 Fragaria x ananassa
FAN04G0828 Fragaria x ananassa
FAN06G1810 Fragaria x ananassa
FAN08G2807 Fragaria x ananassa
FAN12G2651 Fragaria x ananassa
FAN13G1062 Fragaria x ananassa
FAN13G2700 Fragaria x ananassa
FAN13G2878 Fragaria x ananassa
FAN17G1600 Fragaria x ananassa
FAN18G2285 Fragaria x ananassa
FAN18G2457 Fragaria x ananassa
FAN21G0677 Fragaria x ananassa
FAN24G1955 Fragaria x ananassa
FAN24G2149 Fragaria x ananassa
FvH4_4g18280 Fragaria vesca
FvH4_5g00881 Fragaria vesca
FvH4_5g13880 Fragaria vesca
FvH4_5g13920 Fragaria vesca
Glyma.05G021300 Glycine max
Glyma.17G078100 Glycine max
Gohir.A12G182366 Gossypium hirsutum
Gohir.D12G185400 Gossypium hirsutum
Gorai.008G198800 Gossypium raimondii
GSVIVG01033228001 Vitis vinifera
GSVIVG01033230001 Vitis vinifera
HanXRQChr08g0208291 Helianthus annuus
HanXRQChr13g0412931 Helianthus annuus
HanXRQChr16g0502431 Helianthus annuus
Haze_07719 Corylus avellana
Hma1.2p1_0060F.1_g033140 Hydrangea macrophylla
Hma1.2p1_0060F.1_g033150 Hydrangea macrophylla
Hma1.2p1_0456F.1_g156540 Hydrangea macrophylla
HPP92_009477 Vanilla planifolia
Hund02589 Selenicereus undatus
Lalb_Chr12g0197181 Lupinus albus
Lalb_Chr12g0197191 Lupinus albus
Lalb_Chr13g0302881 Lupinus albus
Lj4g0020958 Lotus japonicus
Lj5C102T12 Lonicera japonica
Lsat_1_v5_gn_4_111021 Lactuca sativa
Lsat_1_v5_gn_5_22480 Lactuca sativa
Manes.06G085000 Manihot esculenta
Mapoly0088s0065 Marchantia polymorpha
MBI19_g37728_MAGBIO Magnolia biondii
MCO13G099 Micromonas commoda
MD06G1202400 Malus domestica
MD14G1211500 Malus domestica
Medtr3g070480 Medicago truncatula
Medtr4g109510 Medicago truncatula
MELO3C017222.2 Cucumis melo
Migut.D01668 Erythranthe guttata
MSTRG.9600 Avicennia marina
Nitab4.5_0001485g0130 Nicotiana tabacum
Nitab4.5_0012564g0020 Nicotiana tabacum
Nn3g17443 Nelumbo nucifera
Oeu014402.1 Olea europaea
Oeu042728.1 Olea europaea
Os12g0502700 Oryza sativa ssp. japonica
Peaxi162Scf00201g00248 Petunia axillaris
PGR083G0930 Punica granatum
PGSC0003DMG400024540 Solanum tuberosum
PGSC0003DMG400024541 Solanum tuberosum
Phvul.002G053800 Phaseolus vulgaris
Phvul.003G185100 Phaseolus vulgaris
Potri.009G018400 Populus trichocarpa
Pp3c5_3270 Physcomitrium patens
PRCOL_00006068 Prasinoderma coloniale
PRCOL_00006513 Prasinoderma coloniale
Prupe.5G204600 Prunus persica
Psat0s3618g0080 Pisum sativum
PSO017G0790 Papaver somniferum
PSO478G3647 Papaver somniferum
QL10p019423 Quercus lobata
RcHm_v2.0_Chr2g0129311 Rosa chinensis
RcHm_v2.0_Chr2g0129321 Rosa chinensis
RcHm_v2.0_Chr7g0183041 Rosa chinensis
RcHm_v2.0_Chr7g0183051 Rosa chinensis
RcHm_v2.0_Chr7g0200501 Rosa chinensis
RcHm_v2.0_Chr7g0200511 Rosa chinensis
RcHm_v2.0_Chr7g0200711 Rosa chinensis
Rhsim08G0146200 Rhododendron simsii
Sabra09G0010400 Salix brachista
SalBow2G0571 Salvia bowleyana
SalBow7G3022 Salvia bowleyana
Sc04g0004330 Simmondsia chinensis
Sed0001011 Sechium edule
SEGI_38744 Sequoiadendron giganteum
SGA_v2.0_scaffold42G16038 Striga asiatica
SHI27062 Sapria himalayana
SHI32030 Sapria himalayana
SMO203G0173 Selaginella moellendorffii
Solyc03g115120.1 Solanum lycopersicum
Solyc03g115140.4 Solanum lycopersicum
Sopen03g034190 Solanum pennellii
Sopen03g034200 Solanum pennellii
Sp5g29430 Schrenkiella parvula
TAR264G0004 Trochodendron aralioides
THA.LOC104812102 Tarenaya hassleriana
Thecc.03G101200 Theobroma cacao
Thhalv10018249m.g Eutrema salsugineum
Thhalv10023933m.g Eutrema salsugineum
TPR.G2055 Trifolium pratense
TWI12G1289 Tripterygium wilfordii
TWI15G0273 Tripterygium wilfordii
TWI56G0106 Tripterygium wilfordii
TWI56G1375 Tripterygium wilfordii
unitig_748.g8703 Utricularia gibba
vmacro17608 Vaccinium macrocarpon
VMungo1215G1356 Vigna mungo
Zm00001eb409280 Zea mays
Zm00001eb409300 Zea mays
Zm00001eb409320 Zea mays
Zm00001eb409350 Zea mays
Zm00001eb409390 Zea mays

User provided reference genes

Program Settings