Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p16070 Brassica napus
A08p29630 Brassica napus
Aa31LG7G4370 Aethionema arabicum
Actinidia15402 Actinidia chinensis
Actinidia16963 Actinidia chinensis
Actinidia27504 Actinidia chinensis
Actinidia29790 Actinidia chinensis
Actinidia37973 Actinidia chinensis
Actinidia37974 Actinidia chinensis
Ah.11g039490 Amaranthus hybridus
AL1G32600 Arabidopsis lyrata
Aqoxy5G01461 Aquilegia oxysepala
Aqoxy6G02326 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.261ZZU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7CTW4M Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D2JYDS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GHU3Y0 Arachis hypogaea
AT1G19870 Arabidopsis thaliana
ATR0147G010 Amborella trichopoda
ATR0952G001 Amborella trichopoda
Atru.chr13.329 Acer truncatum
AUR62035431 Chenopodium quinoa
AUR62035714 Chenopodium quinoa
BcaB03g12894 Brassica carinata
BcaB07g32005 Brassica carinata
BcaC05g25881 Brassica carinata
BcaC07g39006 Brassica carinata
BolC5t30548H Brassica oleracea
BolC8t49616H Brassica oleracea
BraA06t24713Z Brassica rapa
C05p18380 Brassica napus
C08p19780 Brassica napus
CAN.G1271.11 Capsicum annuum
CANSAT25G0097 Cannabis sativa
CARHR020370 Cardamine hirsuta
Carub.0001s1939 Capsella rubella
Ca_13402_v3 Cicer arietinum L.
Ca_13415_v3 Cicer arietinum L.
Ca_29786_v3 Cicer arietinum L.
Cc10_g01950 Coffea canephora
CDE02G3574 Ceratophyllum demersum
CDE04G1192 Ceratophyllum demersum
Cfa013920 Carpinus fangiana
Ciclev10000295m.g Citrus clementina
CiPaw.08G064100 Carya illinoinensis
ClCG05G018530 Citrullus lanatus
ClCG08G014420 Citrullus lanatus
Cpa.g.sc26.21 Carica papaya
CsaV3_2G029380 Cucumis sativus L.
CsaV3_3G045640 Cucumis sativus L.
CSS0011131 Camellia sinensis var. sinensis
CSS0029692 Camellia sinensis var. sinensis
DCAR_009937 Daucus carota
DCAR_022438 Daucus carota
Dinv31823 Davidia involucrata
Dinv39496 Davidia involucrata
Dinv39497 Davidia involucrata
Duzib041G0005 Durio zibethinus
Duzib093G0674 Durio zibethinus
Duzib116G0032 Durio zibethinus
ECA233G3940 Erigeron canadensis
ECA238G1430 Erigeron canadensis
EL10Ac1g02250 Beta vulgaris
Eucgr.F01629 Eucalyptus grandis
FAN15G3510 Fragaria x ananassa
FAN20G0280 Fragaria x ananassa
FAN27G1251 Fragaria x ananassa
FvH4_2g38820 Fragaria vesca
Glyma.04G026000 Glycine max
Glyma.06G025800 Glycine max
Gohir.A01G112700 Gossypium hirsutum
Gohir.A05G188000 Gossypium hirsutum
Gohir.A06G005600 Gossypium hirsutum
Gohir.D01G099500 Gossypium hirsutum
Gohir.D05G191000 Gossypium hirsutum
Gohir.D06G001400 Gossypium hirsutum
Gorai.002G124800 Gossypium raimondii
Gorai.009G196200 Gossypium raimondii
Gorai.010G005800 Gossypium raimondii
GSVIVG01009858001 Vitis vinifera
HanXRQChr04g0101151 Helianthus annuus
HanXRQChr12g0367641 Helianthus annuus
HanXRQChr13g0387331 Helianthus annuus
HanXRQChr14g0431291 Helianthus annuus
Haze_22603 Corylus avellana
Hma1.2p1_2476F.1_g322840 Hydrangea macrophylla
HPP92_001560 Vanilla planifolia
HPP92_020925 Vanilla planifolia
Hund05219 Selenicereus undatus
Lalb_Chr08g0246131 Lupinus albus
Lalb_Chr11g0062011 Lupinus albus
Lalb_Chr14g0369751 Lupinus albus
Lj1g0015956 Lotus japonicus
Lj4A794G38 Lonicera japonica
Lj4C28G12 Lonicera japonica
Lj5g0017583 Lotus japonicus
Lsat_1_v5_gn_2_11701 Lactuca sativa
Lsat_1_v5_gn_8_31420 Lactuca sativa
Lsat_1_v5_gn_8_51360 Lactuca sativa
Manes.18G016100 Manihot esculenta
MBI05_g26515_MAGBIO Magnolia biondii
MD08G1015800 Malus domestica
MD15G1014800 Malus domestica
Medtr1g023760 Medicago truncatula
Medtr1g023925 Medicago truncatula
Medtr7g007170 Medicago truncatula
MELO3C003773.2 Cucumis melo
MELO3C010997.2 Cucumis melo
Migut.C00820 Erythranthe guttata
Migut.N03142 Erythranthe guttata
MSTRG.25224 Avicennia marina
Nitab4.5_0001242g0060 Nicotiana tabacum
Nitab4.5_0005185g0030 Nicotiana tabacum
Nitab4.5_0005489g0020 Nicotiana tabacum
Nn5g29267 Nelumbo nucifera
Nn6g32284 Nelumbo nucifera
Oeu007049.1 Olea europaea
Oeu027553.1 Olea europaea
Oeu054711.1 Olea europaea
Os04g0663100 Oryza sativa ssp. japonica
Peaxi162Scf00186g00119 Petunia axillaris
Peaxi162Scf00287g01716 Petunia axillaris
PGR083G1283 Punica granatum
PGSC0003DMG400003722 Solanum tuberosum
Phvul.009G015200 Phaseolus vulgaris
Potri.002G025200 Populus trichocarpa
Potri.005G236200 Populus trichocarpa
Pp3c17_9350 Physcomitrium patens
Prupe.1G369000 Prunus persica
Psat1g160560 Pisum sativum
Psat6g004160 Pisum sativum
Psat6g243160 Pisum sativum
PSO170G4872 Papaver somniferum
PSO210G3933 Papaver somniferum
PSO541G1521 Papaver somniferum
PSO675G6151 Papaver somniferum
QL02p010984 Quercus lobata
RcHm_v2.0_Chr6g0302451 Rosa chinensis
Rhsim07G0245700 Rhododendron simsii
Sabra02G0020200 Salix brachista
Sabra05G0182600 Salix brachista
SalBow7G0720 Salvia bowleyana
SalBow8G2734 Salvia bowleyana
Sc02g0008420 Simmondsia chinensis
Sed0015722 Sechium edule
Sed0015788 Sechium edule
Sed0024056 Sechium edule
SEGI_27290 Sequoiadendron giganteum
SGA_v2.0_scaffold11G05888 Striga asiatica
SGA_v2.0_scaffold80G25828 Striga asiatica
SGA_v2.0_scaffold92G28267 Striga asiatica
SHI08087 Sapria himalayana
Solyc04g081210.4 Solanum lycopersicum
Sopen04g034820 Solanum pennellii
Sp1g17670 Schrenkiella parvula
TAR376G1182 Trochodendron aralioides
TAR381G0884 Trochodendron aralioides
THA.LOC104806899 Tarenaya hassleriana
THA.LOC104811392 Tarenaya hassleriana
THA.LOC104813799 Tarenaya hassleriana
Thecc.08G040700 Theobroma cacao
Thhalv10006839m.g Eutrema salsugineum
TPR.G34366 Trifolium pratense
TWI12G0119 Tripterygium wilfordii
TWI56G0272 Tripterygium wilfordii
unitig_578.g16088 Utricularia gibba
unitig_578.g16089 Utricularia gibba
unitig_8.g4918 Utricularia gibba
vmacro04323 Vaccinium macrocarpon
vmacro04336 Vaccinium macrocarpon
VMungo1309G2404 Vigna mungo
Zm00001eb067350 Zea mays
Zm00001eb432990 Zea mays

User provided reference genes

Program Settings