Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p43140 Brassica napus
A06p30780 Brassica napus
Aa31LG1G17850 Aethionema arabicum
Aa31LG3G17690 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.921 Anthoceros agrestis
Actinidia06630 Actinidia chinensis
Actinidia20083 Actinidia chinensis
Ah.06g190860 Amaranthus hybridus
AL6G19740 Arabidopsis lyrata
AL8G41330 Arabidopsis lyrata
Aqoxy6G00339 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.9PS12T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AFH0P4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EA5EP6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GI519K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H0R63D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P4XMCK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T69UQ6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YT22YU Arachis hypogaea
AT5G09350 Arabidopsis thaliana
AT5G64070 Arabidopsis thaliana
ATR0721G093 Amborella trichopoda
AUR62000495 Chenopodium quinoa
AUR62006840 Chenopodium quinoa
BcaB02g09789 Brassica carinata
BcaB07g29718 Brassica carinata
BcaB07g32714 Brassica carinata
BcaC01g02663 Brassica carinata
BcaC01g02666 Brassica carinata
BcaC03g18241 Brassica carinata
BolC2t12384H Brassica oleracea
BolC3t18483H Brassica oleracea
BraA02t09234Z Brassica rapa
BraA06t26020Z Brassica rapa
C02p63120 Brassica napus
C03p62200 Brassica napus
CAN.G652.7 Capsicum annuum
CANSAT01G1331 Cannabis sativa
CARHR204050 Cardamine hirsuta
CARHR277980 Cardamine hirsuta
Carub.0006s0789 Capsella rubella
Carub.0008s2485 Capsella rubella
Ca_05857_v3 Cicer arietinum L.
Ca_16939_v3 Cicer arietinum L.
Ca_16958_v3 Cicer arietinum L.
CBR_g34503 Chara braunii
Cc07_g18300 Coffea canephora
CDE06G1971 Ceratophyllum demersum
CDE08G1435 Ceratophyllum demersum
Cfa002885 Carpinus fangiana
Ciclev10000085m.g Citrus clementina
CiPaw.03G122700 Carya illinoinensis
CiPaw.04G083500 Carya illinoinensis
ClCG01G015430 Citrullus lanatus
COL.COLO4_35711 Corchorus olitorius
COL.COLO4_35712 Corchorus olitorius
Cpa.g.sc42.143 Carica papaya
Cre06.g304650 Chlamydomonas reinhardtii
CsaV3_6G041660 Cucumis sativus L.
CSS0008777 Camellia sinensis var. sinensis
DCAR_014341 Daucus carota
Dinv24344 Davidia involucrata
ECA232G2812 Erigeron canadensis
EL10Ac4g09596 Beta vulgaris
Eucgr.I00214 Eucalyptus grandis
Eucgr.L02369 Eucalyptus grandis
FAN19G0688 Fragaria x ananassa
FAN23G0558 Fragaria x ananassa
FAN23G0951 Fragaria x ananassa
FAN26G1692 Fragaria x ananassa
FAN28G0438 Fragaria x ananassa
FvH4_1g24240 Fragaria vesca
Glyma.04G213400 Glycine max
Glyma.05G191200 Glycine max
Glyma.06G152800 Glycine max
Glyma.08G156400 Glycine max
Gohir.A12G090600 Gossypium hirsutum
Gohir.D12G084000 Gossypium hirsutum
Gorai.008G094100 Gossypium raimondii
GSVIVG01026496001 Vitis vinifera
HanXRQChr09g0258681 Helianthus annuus
Haze_25220 Corylus avellana
Hma1.2p1_0476F.1_g160915 Hydrangea macrophylla
HPP92_019399 Vanilla planifolia
Hund21821 Selenicereus undatus
Lalb_Chr08g0238391 Lupinus albus
Lalb_Chr12g0203161 Lupinus albus
Lj1g0010712 Lotus japonicus
Lj4A845G44 Lonicera japonica
Lj4C845G3 Lonicera japonica
Lj4g0019129 Lotus japonicus
Lsat_1_v5_gn_5_42641 Lactuca sativa
Lsat_1_v5_gn_8_116820 Lactuca sativa
Manes.12G154400 Manihot esculenta
Manes.13G083201 Manihot esculenta
Mapoly0091s0020 Marchantia polymorpha
MBI06_g29665_MAGBIO Magnolia biondii
MCO08G061 Micromonas commoda
MD09G1261800 Malus domestica
MD17G1256600 Malus domestica
Medtr3g096100 Medicago truncatula
Medtr3g096110 Medicago truncatula
Medtr8g093570 Medicago truncatula
MELO3C008054.2 Cucumis melo
Migut.L00888 Erythranthe guttata
MSTRG.2662 Avicennia marina
Nitab4.5_0002667g0010 Nicotiana tabacum
Nitab4.5_0002667g0020 Nicotiana tabacum
Nitab4.5_0002667g0030 Nicotiana tabacum
Nitab4.5_0005674g0010 Nicotiana tabacum
Nitab4.5_0005674g0020 Nicotiana tabacum
Nn1g06239 Nelumbo nucifera
Nn5g28584 Nelumbo nucifera
Oeu047692.2 Olea europaea
Os11g0209700 Oryza sativa ssp. japonica
Peaxi162Scf00589g00320 Petunia axillaris
PGR079G0002 Punica granatum
PGR119G0653 Punica granatum
PGSC0003DMG401028661 Solanum tuberosum
Phvul.002G271500 Phaseolus vulgaris
Phvul.009G149800 Phaseolus vulgaris
Potri.005G059000 Populus trichocarpa
Potri.007G109000 Populus trichocarpa
Pp3c5_11330 Physcomitrium patens
Pp3c6_11330 Physcomitrium patens
Prupe.3G159200 Prunus persica
Psat0s2140g0080 Pisum sativum
Psat7g045720 Pisum sativum
PSO541G3336 Papaver somniferum
PSO675G2111 Papaver somniferum
QL06p028827 Quercus lobata
QL06p028841 Quercus lobata
RcHm_v2.0_Chr2g0120731 Rosa chinensis
Rhsim10G0135700 Rhododendron simsii
Sabra07G0089100 Salix brachista
SalBow1G1796 Salvia bowleyana
SalBow1G5432 Salvia bowleyana
Sc09g0002360 Simmondsia chinensis
Sed0015970 Sechium edule
SEGI_16906 Sequoiadendron giganteum
SGA_v2.0_scaffold132G34527 Striga asiatica
SHI11475 Sapria himalayana
SMO134G0131 Selaginella moellendorffii
SMO182G0011 Selaginella moellendorffii
Solyc11g005910.2 Solanum lycopersicum
Sopen11g001850 Solanum pennellii
Sp2g27140 Schrenkiella parvula
TAR381G0182 Trochodendron aralioides
TAR381G0306 Trochodendron aralioides
TAR625G0443 Trochodendron aralioides
THA.LOC104800034 Tarenaya hassleriana
Thecc.01G130400 Theobroma cacao
Thhalv10003553m.g Eutrema salsugineum
Thhalv10028006m.g Eutrema salsugineum
TPR.G34649 Trifolium pratense
TPR.G37364 Trifolium pratense
TPR.G7026 Trifolium pratense
TWI31G0593 Tripterygium wilfordii
TWI75G0726 Tripterygium wilfordii
unitig_52.g17244 Utricularia gibba
vmacro12810 Vaccinium macrocarpon
vmacro12811 Vaccinium macrocarpon
vmacro12812 Vaccinium macrocarpon
VMungo0251G2658 Vigna mungo
VMungo1309G0837 Vigna mungo
VMungo1309G1675 Vigna mungo
Zm00001eb027210 Zea mays
Zm00001eb087390 Zea mays
Zm00001eb114410 Zea mays
Zm00001eb168670 Zea mays
Zm00001eb326430 Zea mays
Zm00001eb352480 Zea mays
Zm00001eb361560 Zea mays
Zm00001eb377950 Zea mays

User provided reference genes

Program Settings