Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p25020 Brassica napus
A03p30760 Brassica napus
Aa31LG1G9250 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.3859 Anthoceros agrestis
Actinidia00738 Actinidia chinensis
Actinidia09153 Actinidia chinensis
Ah.08g213040 Amaranthus hybridus
AL1G12800 Arabidopsis lyrata
AL6G50040 Arabidopsis lyrata
Aqoxy2G03257 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.6Q7DFN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BX9H6P Arachis hypogaea
AT1G03290 Arabidopsis thaliana
AT4G02880 Arabidopsis thaliana
ATR0626G273 Amborella trichopoda
Atru.chr12.465 Acer truncatum
Atru.chr12.487 Acer truncatum
Atru.chr5.1370 Acer truncatum
AUR62033708 Chenopodium quinoa
AUR62036814 Chenopodium quinoa
BcaC03g15959 Brassica carinata
BcaC03g16187 Brassica carinata
BcaC05g24546 Brassica carinata
BcaC05g24644 Brassica carinata
BolC2t09733H Brassica oleracea
BolC2t09981H Brassica oleracea
BolC3t16038H Brassica oleracea
BraA02t07491Z Brassica rapa
BraA03t12255Z Brassica rapa
BraA10t42458Z Brassica rapa
C02p37230 Brassica napus
C02p39650 Brassica napus
C03p37460 Brassica napus
CANSAT25G1423 Cannabis sativa
CARHR002590 Cardamine hirsuta
CARHR005950 Cardamine hirsuta
CARHR251270 Cardamine hirsuta
CARHR293790 Cardamine hirsuta
Carub.0001s0240 Capsella rubella
Carub.0006s3419 Capsella rubella
Ca_09771_v3 Cicer arietinum L.
CBR_g40749 Chara braunii
Cc01_g19730 Coffea canephora
CDE05G3031 Ceratophyllum demersum
Cfa006111 Carpinus fangiana
Ciclev10018884m.g Citrus clementina
CiPaw.07G093900 Carya illinoinensis
CiPaw.08G103600 Carya illinoinensis
ClCG09G006910 Citrullus lanatus
COL.COLO4_09133 Corchorus olitorius
Cpa.g.sc837.2 Carica papaya
CsaV3_7G028620 Cucumis sativus L.
CSS0042185 Camellia sinensis var. sinensis
DCAR_002748 Daucus carota
DCAR_018413 Daucus carota
Dinv11249 Davidia involucrata
Dinv11250 Davidia involucrata
Duzib133G0055 Durio zibethinus
Duzib138G0587 Durio zibethinus
ECA233G2474 Erigeron canadensis
ECA234G2489 Erigeron canadensis
ECA236G2305 Erigeron canadensis
ECA236G2562 Erigeron canadensis
ECA236G3018 Erigeron canadensis
ECA247G3795 Erigeron canadensis
ECA248G1820 Erigeron canadensis
EL10Ac7g17209 Beta vulgaris
Eucgr.H01516 Eucalyptus grandis
Eucgr.K03388 Eucalyptus grandis
FvH4_2g23870 Fragaria vesca
Glyma.02G148900 Glycine max
Glyma.10G025000 Glycine max
Gohir.A08G185500 Gossypium hirsutum
Gohir.A12G005900 Gossypium hirsutum
Gohir.D01G114520 Gossypium hirsutum
Gohir.D02G151450 Gossypium hirsutum
Gohir.D06G055550 Gossypium hirsutum
Gohir.D08G203601 Gossypium hirsutum
Gohir.D12G005400 Gossypium hirsutum
Gorai.004G215600 Gossypium raimondii
Gorai.007G029100 Gossypium raimondii
Gorai.008G005300 Gossypium raimondii
Gorai.013G189300 Gossypium raimondii
GSVIVG01011103001 Vitis vinifera
HanXRQChr01g0002351 Helianthus annuus
HanXRQChr03g0063751 Helianthus annuus
HanXRQChr03g0063771 Helianthus annuus
HanXRQChr03g0063801 Helianthus annuus
HanXRQChr04g0118801 Helianthus annuus
HanXRQChr10g0298691 Helianthus annuus
HanXRQChr11g0327641 Helianthus annuus
Haze_04739 Corylus avellana
Hma1.2p1_0118F.1_g056525 Hydrangea macrophylla
Hma1.2p1_0118F.1_g056540 Hydrangea macrophylla
Hma1.2p1_0628F.1_g191955 Hydrangea macrophylla
HPP92_003154 Vanilla planifolia
Hund17963 Selenicereus undatus
Hund28856 Selenicereus undatus
Hund28858 Selenicereus undatus
Lalb_Chr02g0142861 Lupinus albus
Lalb_Chr21g0306531 Lupinus albus
Lj2A1177T38 Lonicera japonica
Lj5g0010123 Lotus japonicus
Lsat_1_v5_gn_5_187400 Lactuca sativa
Manes.01G209500 Manihot esculenta
Mapoly0005s0053 Marchantia polymorpha
MBI05_g27108_MAGBIO Magnolia biondii
MBI17_g12005_MAGBIO Magnolia biondii
MBI19_g13735_MAGBIO Magnolia biondii
MD03G1268400 Malus domestica
MD11G1124600 Malus domestica
MD11G1289200 Malus domestica
Medtr1g072560 Medicago truncatula
MELO3C015856.2 Cucumis melo
Migut.D00269 Erythranthe guttata
Migut.N02157 Erythranthe guttata
MSTRG.12568 Avicennia marina
MSTRG.18219 Avicennia marina
Nitab4.5_0001028g0170 Nicotiana tabacum
Nitab4.5_0011633g0010 Nicotiana tabacum
Nn4g26185 Nelumbo nucifera
Oeu028079.1 Olea europaea
Oeu047882.1 Olea europaea
Os05g0394900 Oryza sativa ssp. japonica
Os10g0315400 Oryza sativa ssp. japonica
Peaxi162Scf00145g00517 Petunia axillaris
Peaxi162Scf00570g00314 Petunia axillaris
PGR031G1662 Punica granatum
PGR044G1283 Punica granatum
Phvul.007G169800 Phaseolus vulgaris
Potri.014G139000 Populus trichocarpa
Pp3c15_12690 Physcomitrium patens
Pp3c9_12210 Physcomitrium patens
Prupe.8G244100 Prunus persica
Psat6g061120 Pisum sativum
PSO170G1481 Papaver somniferum
PSO407G0422 Papaver somniferum
QL12p022414 Quercus lobata
RcHm_v2.0_Chr6g0290811 Rosa chinensis
RcHm_v2.0_Chr6g0291481 Rosa chinensis
Sabra02G0167700 Salix brachista
Sabra14G0104800 Salix brachista
SalBow4G1908 Salvia bowleyana
SalBow6G7233 Salvia bowleyana
Sc24g0004120 Simmondsia chinensis
Sed0023986 Sechium edule
Sed0026091 Sechium edule
SEGI_03888 Sequoiadendron giganteum
SGA_v2.0_scaffold11G05799 Striga asiatica
SGA_v2.0_scaffold258G45767 Striga asiatica
SGA_v2.0_scaffold420G51307 Striga asiatica
SMO364G0006 Selaginella moellendorffii
Solyc09g064860.3 Solanum lycopersicum
Sopen09g026560 Solanum pennellii
Sp1g02290 Schrenkiella parvula
Sp6g02920 Schrenkiella parvula
TAR362G1233 Trochodendron aralioides
TAR365G0909 Trochodendron aralioides
TAR365G0933 Trochodendron aralioides
TAR633G0135 Trochodendron aralioides
TAR636G0803 Trochodendron aralioides
THA.LOC104801219 Tarenaya hassleriana
Thecc.01G282900 Theobroma cacao
Thhalv10007330m.g Eutrema salsugineum
Thhalv10028568m.g Eutrema salsugineum
TPR.G1562 Trifolium pratense
TWI14G0752 Tripterygium wilfordii
TWI59G1189 Tripterygium wilfordii
unitig_0.g1008 Utricularia gibba
vmacro02552 Vaccinium macrocarpon
VMungo0720G2446 Vigna mungo
VMungo0720G2698 Vigna mungo
Zm00001eb287880 Zea mays
Zm00001eb349530 Zea mays

User provided reference genes

Program Settings