Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p17910 Brassica napus
A07p14920 Brassica napus
A08p28790 Brassica napus
A10p07490 Brassica napus
Aa31LG6G9320 Aethionema arabicum
Aa31LG7G5780 Aethionema arabicum
Actinidia03470 Actinidia chinensis
Actinidia21321 Actinidia chinensis
Actinidia29465 Actinidia chinensis
Ah.05g171110 Amaranthus hybridus
AL1G35020 Arabidopsis lyrata
AL1G52380 Arabidopsis lyrata
Aqoxy6G00215 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea
AT1G21830 Arabidopsis thaliana
AT1G44608 Arabidopsis thaliana
ATR0584G004 Amborella trichopoda
Atru.chr13.1448 Acer truncatum
Atru.chr13.1472 Acer truncatum
AUR62014339 Chenopodium quinoa
BcaB03g11881 Brassica carinata
BcaB03g14254 Brassica carinata
BcaB07g32179 Brassica carinata
BcaB07g32181 Brassica carinata
BcaC05g26103 Brassica carinata
BcaC06g34904 Brassica carinata
BcaC07g39124 Brassica carinata
BcaC08g42859 Brassica carinata
BolC5t30780H Brassica oleracea
BolC6t35208H Brassica oleracea
BolC7t42725H Brassica oleracea
BolC8t49750H Brassica oleracea
BraA06t24881Z Brassica rapa
BraA07t29235Z Brassica rapa
BraA08t34808Z Brassica rapa
BraSC36t46058Z Brassica rapa
C05p20810 Brassica napus
C06p00700 Brassica napus
C07p21950 Brassica napus
C08p21130 Brassica napus
CANSAT25G0779 Cannabis sativa
CARHR022190 Cardamine hirsuta
CARHR035970 Cardamine hirsuta
Carub.0001s2127 Capsella rubella
Carub.0001s3524 Capsella rubella
Ca_16556_v3 Cicer arietinum L.
Cc10_g11860 Coffea canephora
CDE02G3357 Ceratophyllum demersum
CDE06G0283 Ceratophyllum demersum
CDE08G0380 Ceratophyllum demersum
CDE08G1629 Ceratophyllum demersum
CDE12G0877 Ceratophyllum demersum
Cfa016015 Carpinus fangiana
Ciclev10002301m.g Citrus clementina
CiPaw.06G030700 Carya illinoinensis
ClCG08G005630 Citrullus lanatus
COL.COLO4_35922 Corchorus olitorius
Cpa.g.sc64.85 Carica papaya
CsaV3_6G034510 Cucumis sativus L.
CSS0019596 Camellia sinensis var. sinensis
CSS0040709 Camellia sinensis var. sinensis
DCAR_014087 Daucus carota
Dinv07222 Davidia involucrata
Dinv27317 Davidia involucrata
Duzib041G0805 Durio zibethinus
Duzib093G0488 Durio zibethinus
Duzib116G0782 Durio zibethinus
EL10Ac1g01007 Beta vulgaris
Eucgr.F04353 Eucalyptus grandis
FAN20G2831 Fragaria x ananassa
FAN24G3177 Fragaria x ananassa
FAN27G3464 Fragaria x ananassa
FvH4_2g26860 Fragaria vesca
Glyma.04G249900 Glycine max
Glyma.06G113000 Glycine max
Glyma.13G079800 Glycine max
Glyma.14G150000 Glycine max
Gohir.A01G188900 Gossypium hirsutum
Gohir.A02G073100 Gossypium hirsutum
Gohir.A05G235000 Gossypium hirsutum
Gohir.A05G268750 Gossypium hirsutum
Gohir.D01G180600 Gossypium hirsutum
Gohir.D02G080400 Gossypium hirsutum
Gohir.D05G237300 Gossypium hirsutum
Gohir.D05G270600 Gossypium hirsutum
Gorai.002G222000 Gossypium raimondii
Gorai.005G089800 Gossypium raimondii
Gorai.009G245700 Gossypium raimondii
Gorai.009G283200 Gossypium raimondii
GSVIVG01008871001 Vitis vinifera
HanXRQChr04g0125261 Helianthus annuus
Haze_00445 Corylus avellana
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla
HPP92_011945 Vanilla planifolia
HPP92_011964 Vanilla planifolia
Hund17292 Selenicereus undatus
Hund26811 Selenicereus undatus
Lalb_Chr08g0241451 Lupinus albus
Lalb_Chr10g0101721 Lupinus albus
Lalb_Chr23g0271011 Lupinus albus
Lj1g0016270 Lotus japonicus
Lj4C625T3 Lonicera japonica
Lj7P340T24 Lonicera japonica
Lsat_1_v5_gn_5_101481 Lactuca sativa
Manes.02G162900 Manihot esculenta
Manes.18G077000 Manihot esculenta
MBI09_g12159_MAGBIO Magnolia biondii
MBI16_g07656_MAGBIO Magnolia biondii
MD08G1163000 Malus domestica
MD15G1349700 Malus domestica
Medtr3g088010 Medicago truncatula
MELO3C010605.2 Cucumis melo
Migut.C01125 Erythranthe guttata
Migut.N03284 Erythranthe guttata
MSTRG.1442 Avicennia marina
MSTRG.22410 Avicennia marina
MSTRG.25384 Avicennia marina
Nitab4.5_0000051g0220 Nicotiana tabacum
Nitab4.5_0016080g0010 Nicotiana tabacum
Nn1g08787 Nelumbo nucifera
Nn5g27936 Nelumbo nucifera
Nn5g28281 Nelumbo nucifera
Oeu026152.1 Olea europaea
Oeu047951.1 Olea europaea
Oeu050916.1 Olea europaea
Oeu050917.2 Olea europaea
Oeu059434.1 Olea europaea
Os04g0690500 Oryza sativa ssp. japonica
Peaxi162Scf00018g00027 Petunia axillaris
PGR044G2543 Punica granatum
PGSC0003DMG400027788 Solanum tuberosum
Phvul.008G163001 Phaseolus vulgaris
Phvul.009G124900 Phaseolus vulgaris
Potri.002G083900 Populus trichocarpa
Potri.005G177600 Populus trichocarpa
Prupe.1G498100 Prunus persica
Psat5g087920 Pisum sativum
PSO017G3194 Papaver somniferum
PSO170G2295 Papaver somniferum
PSO528G0204 Papaver somniferum
RcHm_v2.0_Chr6g0295711 Rosa chinensis
Rhsim06G0103600 Rhododendron simsii
RhsimUnG0092700 Rhododendron simsii
Sabra02G0065700 Salix brachista
Sabra05G0134100 Salix brachista
SalBow6G7056 Salvia bowleyana
SalBow7G3581 Salvia bowleyana
Sed0014468 Sechium edule
SEGI_38674 Sequoiadendron giganteum
SGA_v2.0_scaffold24G10460 Striga asiatica
SGA_v2.0_scaffold25G11123 Striga asiatica
SGA_v2.0_scaffold52G18967 Striga asiatica
Solyc11g013450.2 Solanum lycopersicum
Sopen11g008440 Solanum pennellii
Sp1g19380 Schrenkiella parvula
Sp1g33590 Schrenkiella parvula
TAR376G1087 Trochodendron aralioides
TAR628G0258 Trochodendron aralioides
THA.LOC104800196 Tarenaya hassleriana
THA.LOC104806821 Tarenaya hassleriana
THA.LOC104813655 Tarenaya hassleriana
THA.LOC104817318 Tarenaya hassleriana
Thecc.08G124900 Theobroma cacao
Thhalv10008805m.g Eutrema salsugineum
Thhalv10011817m.g Eutrema salsugineum
TPR.G21067 Trifolium pratense
TWI36G0058 Tripterygium wilfordii
TWI56G0850 Tripterygium wilfordii
unitig_46.g18107 Utricularia gibba
vmacro00834 Vaccinium macrocarpon
VMungo0647G0089 Vigna mungo
VMungo0647G1885 Vigna mungo
VMungo1309G2318 Vigna mungo
Zm00001eb076410 Zea mays

User provided reference genes

Program Settings