Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p06910 Brassica napus
A03p11500 Brassica napus
A10p16970 Brassica napus
Aa31LG4G15290 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.2949 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_117.461 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.2665 Anthoceros agrestis
Actinidia03777 Actinidia chinensis
Actinidia33854 Actinidia chinensis
Ah.08g214870 Amaranthus hybridus
Ah.15g096830 Amaranthus hybridus
AL5G24910 Arabidopsis lyrata
AL8G36260 Arabidopsis lyrata
Aqoxy4G03037 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.95NMQN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AUFX4T Arachis hypogaea
AT3G46180 Arabidopsis thaliana
AT5G59740 Arabidopsis thaliana
ATR0326G021 Amborella trichopoda
ATR0782G014 Amborella trichopoda
ATR0782G049 Amborella trichopoda
Atru.chr3.3810 Acer truncatum
AUR62014952 Chenopodium quinoa
AUR62029186 Chenopodium quinoa
AUR62035919 Chenopodium quinoa
AUR62035920 Chenopodium quinoa
BcaB05g22537 Brassica carinata
BcaB05g22572 Brassica carinata
BcaC01g06551 Brassica carinata
BcaC04g19625 Brassica carinata
BolC2t07323H Brassica oleracea
BolC3t13794H Brassica oleracea
BolC9t58089H Brassica oleracea
BraA02t05770Z Brassica rapa
BraA03t10464Z Brassica rapa
BraA10t43781Z Brassica rapa
C02p12210 Brassica napus
C03p13320 Brassica napus
C09p52220 Brassica napus
CAN.G241.39 Capsicum annuum
CAN.G819.8 Capsicum annuum
CAN.G820.8 Capsicum annuum
CANSAT54G2978 Cannabis sativa
CARHR154570 Cardamine hirsuta
CARHR273320 Cardamine hirsuta
Carub.0005s1200 Capsella rubella
Carub.0008s2039 Capsella rubella
CBR_g22482 Chara braunii
Cc01_g12230 Coffea canephora
CDE02G1453 Ceratophyllum demersum
Cfa011440 Carpinus fangiana
Ciclev10029203m.g Citrus clementina
CiPaw.13G100100 Carya illinoinensis
CiPaw.14G072900 Carya illinoinensis
ClCG02G020490 Citrullus lanatus
COL.COLO4_18437 Corchorus olitorius
Cpa.g.sc252.18 Carica papaya
Cre06.g260100 Chlamydomonas reinhardtii
Cre16.g676900 Chlamydomonas reinhardtii
CsaV3_6G022130 Cucumis sativus L.
CSS0045967 Camellia sinensis var. sinensis
DCAR_006010 Daucus carota
DCAR_023863 Daucus carota
Dinv26277 Davidia involucrata
Duzib150G0206 Durio zibethinus
Duzib168G2133 Durio zibethinus
ECA248G2684 Erigeron canadensis
EL10Ac4g08133 Beta vulgaris
EL10Ac7g15957 Beta vulgaris
Eucgr.J02078 Eucalyptus grandis
FAN11G3073 Fragaria x ananassa
FAN16G2231 Fragaria x ananassa
FAN21G4048 Fragaria x ananassa
FAN25G3842 Fragaria x ananassa
FvH4_3g34850 Fragaria vesca
Glyma.11G143500 Glycine max
Glyma.12G066800 Glycine max
Glyma.13G332500 Glycine max
Glyma.15G041700 Glycine max
Gohir.A03G038100 Gossypium hirsutum
Gohir.A05G098200 Gossypium hirsutum
Gohir.D03G130300 Gossypium hirsutum
Gohir.D05G098300 Gossypium hirsutum
Gorai.003G137000 Gossypium raimondii
Gorai.009G101900 Gossypium raimondii
GSVIVG01025043001 Vitis vinifera
HanXRQChr01g0009941 Helianthus annuus
HanXRQChr11g0340301 Helianthus annuus
Haze_24023 Corylus avellana
Hma1.2p1_0846F.1_g227680 Hydrangea macrophylla
HPP92_021083 Vanilla planifolia
HPP92_021085 Vanilla planifolia
Hund05010 Selenicereus undatus
Lalb_Chr14g0374961 Lupinus albus
Lalb_Chr22g0350001 Lupinus albus
Lj1A161T61 Lonicera japonica
Lj2C1051T6 Lonicera japonica
Lj3g0005665 Lotus japonicus
Lj3g0020703 Lotus japonicus
Lsat_1_v5_gn_5_138780 Lactuca sativa
Lsat_1_v5_gn_5_166500 Lactuca sativa
Manes.11G135100 Manihot esculenta
Mapoly0039s0069 Marchantia polymorpha
MBI05_g07846_MAGBIO Magnolia biondii
MCO02G038 Micromonas commoda
MCO04G404 Micromonas commoda
MD03G1100700 Malus domestica
MD05G1008500 Malus domestica
MD11G1114800 Malus domestica
Medtr2g096300 Medicago truncatula
Medtr4g063040 Medicago truncatula
MELO3C013673.2 Cucumis melo
Migut.N02659 Erythranthe guttata
MSTRG.12630 Avicennia marina
Nitab4.5_0000070g0080 Nicotiana tabacum
Nitab4.5_0000610g0230 Nicotiana tabacum
Nitab4.5_0003179g0080 Nicotiana tabacum
Nitab4.5_0010238g0010 Nicotiana tabacum
Nn6g34882 Nelumbo nucifera
Oeu040286.1 Olea europaea
Oeu041008.1 Olea europaea
Oeu058524.1 Olea europaea
Os05g0115700 Oryza sativa ssp. japonica
Peaxi162Scf00406g00132 Petunia axillaris
PGR119G1985 Punica granatum
PGSC0003DMG400010880 Solanum tuberosum
PGSC0003DMG400015563 Solanum tuberosum
Phvul.011G067700 Phaseolus vulgaris
Phvul.L002043 Phaseolus vulgaris
Potri.001G234800 Populus trichocarpa
Pp3c14_24680 Physcomitrium patens
Pp3c15_1070 Physcomitrium patens
Pp3c17_24210 Physcomitrium patens
PRCOL_00003646 Prasinoderma coloniale
Prupe.6G085700 Prunus persica
Psat5g282440 Pisum sativum
PSO206G0007 Papaver somniferum
PSO339G1754 Papaver somniferum
QL01p033527 Quercus lobata
RcHm_v2.0_Chr5g0062701 Rosa chinensis
Rhsim01G0224300 Rhododendron simsii
Rhsim13G0087500 Rhododendron simsii
Sabra16G0141000 Salix brachista
SalBow3G3142 Salvia bowleyana
Sc21g0005410 Simmondsia chinensis
Sed0000090 Sechium edule
SGA_v2.0_scaffold39G15249 Striga asiatica
SHI07539 Sapria himalayana
SMO358G0604 Selaginella moellendorffii
Solyc06g005290.3 Solanum lycopersicum
Solyc11g073190.2 Solanum lycopersicum
Sopen06g001270 Solanum pennellii
Sopen11g030820 Solanum pennellii
Sp5g15450 Schrenkiella parvula
Sp6g21410 Schrenkiella parvula
TAR633G2721 Trochodendron aralioides
TAR636G3601 Trochodendron aralioides
THA.LOC104799459 Tarenaya hassleriana
THA.LOC104810797 Tarenaya hassleriana
Thecc.09G328700 Theobroma cacao
Thhalv10002597m.g Eutrema salsugineum
Thhalv10014012m.g Eutrema salsugineum
TPR.G34316 Trifolium pratense
TPR.G35371 Trifolium pratense
TPR.G386 Trifolium pratense
TWI31G0176 Tripterygium wilfordii
TWI79G0386 Tripterygium wilfordii
unitig_744.g24621 Utricularia gibba
unitig_744.g24622 Utricularia gibba
vmacro03118 Vaccinium macrocarpon
vmacro14502 Vaccinium macrocarpon
VMungo1080G1641 Vigna mungo
VMungo1127G2086 Vigna mungo
Zm00001eb266330 Zea mays
Zm00001eb355590 Zea mays

User provided reference genes

Program Settings