Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p24090 Brassica napus
A05p14440 Brassica napus
Aa31LG5G5690 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1675 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.134 Anthoceros agrestis
Actinidia12891 Actinidia chinensis
Ah.02g111890 Amaranthus hybridus
Ah.11g049650 Amaranthus hybridus
AL4G26480 Arabidopsis lyrata
Aqoxy1G00848 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0L9E2L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.61T5XF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B4WKJK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M1CRL2 Arachis hypogaea
AT2G31260 Arabidopsis thaliana
ATR0559G363 Amborella trichopoda
ATR0680G230 Amborella trichopoda
ATR1132G061 Amborella trichopoda
ATR1132G068 Amborella trichopoda
Atru.chr5.1648 Acer truncatum
AUR62011889 Chenopodium quinoa
AUR62024729 Chenopodium quinoa
AUR62024730 Chenopodium quinoa
BcaB02g10369 Brassica carinata
BcaB06g28436 Brassica carinata
BcaB06g28437 Brassica carinata
BcaB06g28438 Brassica carinata
BcaB06g28520 Brassica carinata
BcaC02g11207 Brassica carinata
BolC4t23456H Brassica oleracea
BolC4t27568H Brassica oleracea
BraA04t17928Z Brassica rapa
BraA05t20372Z Brassica rapa
C04p19230 Brassica napus
C04p60770 Brassica napus
CAN.G194.11 Capsicum annuum
CANSAT01G0525 Cannabis sativa
CARHR124850 Cardamine hirsuta
Carub.0004s1253 Capsella rubella
Ca_09689_v3 Cicer arietinum L.
CBR_g24398 Chara braunii
Cc11_g02590 Coffea canephora
CDE02G3928 Ceratophyllum demersum
CDE06G1301 Ceratophyllum demersum
CDE06G1379 Ceratophyllum demersum
Cfa025050 Carpinus fangiana
Ciclev10018809m.g Citrus clementina
CiPaw.03G262600 Carya illinoinensis
CiPaw.04G185700 Carya illinoinensis
ClCG07G000970 Citrullus lanatus
COL.COLO4_05173 Corchorus olitorius
Cpa.g.sc50.33 Carica papaya
Cre09.g391500 Chlamydomonas reinhardtii
CsaV3_3G022520 Cucumis sativus L.
CSS0019197 Camellia sinensis var. sinensis
CSS0024912 Camellia sinensis var. sinensis
DCAR_000939 Daucus carota
DCAR_005697 Daucus carota
Dinv22416 Davidia involucrata
Dinv34610 Davidia involucrata
Duzib133G1136 Durio zibethinus
Duzib138G0375 Durio zibethinus
Duzib211G0218 Durio zibethinus
ECA236G2624 Erigeron canadensis
ECA247G3763 Erigeron canadensis
EL10Ac5g10415 Beta vulgaris
Eucgr.B01536 Eucalyptus grandis
FAN15G1892 Fragaria x ananassa
FAN20G1573 Fragaria x ananassa
FAN24G2194 Fragaria x ananassa
FAN27G0583 Fragaria x ananassa
FvH4_2g21710 Fragaria vesca
Glyma.03G162100 Glycine max
Glyma.10G035800 Glycine max
Glyma.13G122200 Glycine max
Glyma.19G163500 Glycine max
Gohir.A08G060000 Gossypium hirsutum
Gohir.A08G189300 Gossypium hirsutum
Gohir.A11G129900 Gossypium hirsutum
Gohir.D08G069200 Gossypium hirsutum
Gohir.D08G207800 Gossypium hirsutum
Gohir.D11G135600 Gossypium hirsutum
Gorai.004G072800 Gossypium raimondii
Gorai.004G220200 Gossypium raimondii
Gorai.007G145200 Gossypium raimondii
GSVIVG01028304001 Vitis vinifera
HanXRQChr08g0217761 Helianthus annuus
HanXRQChr10g0281061 Helianthus annuus
HanXRQChr15g0467921 Helianthus annuus
Haze_24609 Corylus avellana
Hma1.2p1_0621F.1_g190820 Hydrangea macrophylla
HPP92_008421 Vanilla planifolia
HPP92_008425 Vanilla planifolia
Hund02908 Selenicereus undatus
Hund02909 Selenicereus undatus
Hund09596 Selenicereus undatus
Lalb_Chr02g0152311 Lupinus albus
Lalb_Chr06g0170381 Lupinus albus
Lj1A65T50 Lonicera japonica
Lj1g0003934 Lotus japonicus
Lj2A1153G48 Lonicera japonica
Lj5g0017930 Lotus japonicus
Lsat_1_v5_gn_9_8721 Lactuca sativa
Manes.12G031400 Manihot esculenta
Mapoly0002s0148 Marchantia polymorpha
MBI17_g07970_MAGBIO Magnolia biondii
MBI18_g15332_MAGBIO Magnolia biondii
MCO05G121 Micromonas commoda
MD05G1199600 Malus domestica
MD10G1185900 Malus domestica
Medtr1g070160 Medicago truncatula
Medtr7g096680 Medicago truncatula
MELO3C012904.2 Cucumis melo
Migut.D00414 Erythranthe guttata
MSTRG.18316 Avicennia marina
Nitab4.5_0000129g0340 Nicotiana tabacum
Nitab4.5_0001419g0010 Nicotiana tabacum
Nn3g17035 Nelumbo nucifera
Nn4g22928 Nelumbo nucifera
Oeu026512.1 Olea europaea
Oeu039681.1 Olea europaea
Oeu058816.4 Olea europaea
Os03g0248000 Oryza sativa ssp. japonica
Os10g0163100 Oryza sativa ssp. japonica
Peaxi162Scf00329g00811 Petunia axillaris
PGR044G1639 Punica granatum
PGSC0003DMG400031378 Solanum tuberosum
Phvul.001G159900 Phaseolus vulgaris
Phvul.007G194300 Phaseolus vulgaris
Potri.002G039900 Populus trichocarpa
Potri.005G222800 Populus trichocarpa
Pp3c10_9800 Physcomitrium patens
Pp3c2_1820 Physcomitrium patens
PRCOL_00006952 Prasinoderma coloniale
Prupe.8G225400 Prunus persica
Psat2g015440 Pisum sativum
Psat3g058480 Pisum sativum
Psat6g055320 Pisum sativum
PSO063G1318 Papaver somniferum
PSO782G1372 Papaver somniferum
QL09p038243 Quercus lobata
RcHm_v2.0_Chr6g0288391 Rosa chinensis
Rhsim13G0034000 Rhododendron simsii
Sabra02G0032000 Salix brachista
Sabra05G0171500 Salix brachista
SalBow4G2825 Salvia bowleyana
Sc17g0000730 Simmondsia chinensis
Sc17g0000740 Simmondsia chinensis
Sed0015853 Sechium edule
Sed0025131 Sechium edule
SEGI_30090 Sequoiadendron giganteum
SGA_v2.0_scaffold138G35249 Striga asiatica
SHI09836 Sapria himalayana
SMO239G0162 Selaginella moellendorffii
Solyc04g008630.3 Solanum lycopersicum
Sopen04g003790 Solanum pennellii
Sp4g13740 Schrenkiella parvula
TAR362G0234 Trochodendron aralioides
TAR633G0700 Trochodendron aralioides
THA.LOC104800875 Tarenaya hassleriana
THA.LOC104826212 Tarenaya hassleriana
Thecc.01G260300 Theobroma cacao
Thhalv10016226m.g Eutrema salsugineum
TPR.G16308 Trifolium pratense
TPR.G3551 Trifolium pratense
TWI12G0927 Tripterygium wilfordii
TWI18G0068 Tripterygium wilfordii
TWI75G1776 Tripterygium wilfordii
unitig_0.g154 Utricularia gibba
unitig_60.g25752 Utricularia gibba
vmacro02653 Vaccinium macrocarpon
VMungo0251G0786 Vigna mungo
VMungo0720G0690 Vigna mungo
VMungo0720G0978 Vigna mungo
VMungo1383G0117 Vigna mungo
Zm00001eb010620 Zea mays

User provided reference genes

Program Settings