Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p01940 Brassica napus
A03p05990 Brassica napus
A10p24800 Brassica napus
Aa31LG3G15250 Aethionema arabicum
Aa31LG5G18610 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.1217 Anthoceros agrestis
Actinidia20668 Actinidia chinensis
Actinidia21554 Actinidia chinensis
Ah.06g182390 Amaranthus hybridus
Ah.06g182400 Amaranthus hybridus
AL6G24070 Arabidopsis lyrata
Aqoxy2G00123 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4Z64RL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9I3PL7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XF35YI Arachis hypogaea
AT5G13450 Arabidopsis thaliana
ATR0605G205 Amborella trichopoda
Atru.chr11.2659 Acer truncatum
AUR62009382 Chenopodium quinoa
AUR62027358 Chenopodium quinoa
AUR62027419 Chenopodium quinoa
BcaB01g05358 Brassica carinata
BcaB06g27143 Brassica carinata
BcaC04g19115 Brassica carinata
BcaNung01153 Brassica carinata
BcaNung01885 Brassica carinata
BolC2t06557H Brassica oleracea
BolC3t13201H Brassica oleracea
BolC4t26421H Brassica oleracea
BolC9t59206H Brassica oleracea
BraA02t05167Z Brassica rapa
BraA03t09936Z Brassica rapa
BraA10t44544Z Brassica rapa
C03p07030 Brassica napus
C09p63620 Brassica napus
CAN.G1560.6 Capsicum annuum
CANSAT80G0274 Cannabis sativa
CARHR199980 Cardamine hirsuta
Carub.0006s1161 Capsella rubella
Ca_14380_v3 Cicer arietinum L.
CBR_g17944 Chara braunii
Cc02_g27920 Coffea canephora
CDE05G0778 Ceratophyllum demersum
CDE05G2400 Ceratophyllum demersum
Ciclev10032620m.g Citrus clementina
CiPaw.13G004600 Carya illinoinensis
ClCG09G004190 Citrullus lanatus
ClCG10G012410 Citrullus lanatus
COL.COLO4_23932 Corchorus olitorius
Cpa.g.c41216 Carica papaya
Cpa.g.sc245.17 Carica papaya
Cre16.g680000 Chlamydomonas reinhardtii
CsaV3_3G032180 Cucumis sativus L.
CsaV3_3G032190 Cucumis sativus L.
CsaV3_7G031080 Cucumis sativus L.
CSS0031611 Camellia sinensis var. sinensis
DCAR_006337 Daucus carota
Dinv43448 Davidia involucrata
Duzib138G0053 Durio zibethinus
Duzib268G1708 Durio zibethinus
ECA248G3800 Erigeron canadensis
EL10Ac3g05626 Beta vulgaris
Eucgr.I01987 Eucalyptus grandis
FAN01G2341 Fragaria x ananassa
FAN03G0639 Fragaria x ananassa
FAN04G1554 Fragaria x ananassa
FAN06G4274 Fragaria x ananassa
FAN10G2592 Fragaria x ananassa
FAN13G3241 Fragaria x ananassa
FAN18G0724 Fragaria x ananassa
FvH4_5g10590 Fragaria vesca
FvH4_7g01010 Fragaria vesca
Glyma.08G155200 Glycine max
Glyma.15G273900 Glycine max
Gohir.A12G094100 Gossypium hirsutum
Gohir.D12G096966 Gossypium hirsutum
Gorai.008G105300 Gossypium raimondii
GSVIVG01024256001 Vitis vinifera
GSVIVG01032087001 Vitis vinifera
HanXRQChr01g0016231 Helianthus annuus
HanXRQChr16g0524521 Helianthus annuus
HanXRQChr17g0562951 Helianthus annuus
Haze_18530 Corylus avellana
Haze_20480 Corylus avellana
HPP92_003787 Vanilla planifolia
Hund14179 Selenicereus undatus
Hund16627 Selenicereus undatus
Lalb_Chr08g0232821 Lupinus albus
Lalb_Chr11g0073961 Lupinus albus
Lj4g0010030 Lotus japonicus
Lj7A570T56 Lonicera japonica
Lj9A631T54 Lonicera japonica
Lsat_1_v5_gn_1_107400 Lactuca sativa
Lsat_1_v5_gn_1_107421 Lactuca sativa
Manes.07G005701 Manihot esculenta
Manes.10G143400 Manihot esculenta
Mapoly0003s0068 Marchantia polymorpha
MBI01_g18885_MAGBIO Magnolia biondii
MBI04_g36067_MAGBIO Magnolia biondii
MBI11_g30551_MAGBIO Magnolia biondii
MCO05G116 Micromonas commoda
MD02G1312800 Malus domestica
MD07G1010400 Malus domestica
Medtr3g028730 Medicago truncatula
MELO3C023548.2 Cucumis melo
MELO3C030665.2 Cucumis melo
MELO3C030924.2 Cucumis melo
Migut.N01593 Erythranthe guttata
MSTRG.28071 Avicennia marina
MSTRG.5022 Avicennia marina
Nitab4.5_0000634g0150 Nicotiana tabacum
Nitab4.5_0002179g0040 Nicotiana tabacum
Nn2g15387 Nelumbo nucifera
Nn7g36192 Nelumbo nucifera
Oeu006575.2 Olea europaea
Oeu014581.1 Olea europaea
Oeu047573.1 Olea europaea
Os06g0646500 Oryza sativa ssp. japonica
Peaxi162Scf00428g00211 Petunia axillaris
PGR042G2196 Punica granatum
PGR044G2681 Punica granatum
PGSC0003DMG400006869 Solanum tuberosum
Phvul.005G021000 Phaseolus vulgaris
Potri.009G061600 Populus trichocarpa
Pp3c11_16260 Physcomitrium patens
Pp3c21_13430 Physcomitrium patens
Pp3c21_15430 Physcomitrium patens
PRCOL_00004246 Prasinoderma coloniale
Prupe.2G012700 Prunus persica
Psat5g207400 Pisum sativum
PSO339G6021 Papaver somniferum
PSO384G2850 Papaver somniferum
QL04p006659 Quercus lobata
QL04p007936 Quercus lobata
RcHm_v2.0_Chr1g0315911 Rosa chinensis
RcHm_v2.0_Chr7g0187561 Rosa chinensis
Rhsim01G0052900 Rhododendron simsii
Rhsim01G0081100 Rhododendron simsii
Rhsim01G0129500 Rhododendron simsii
Rhsim02G0048300 Rhododendron simsii
Rhsim02G0189700 Rhododendron simsii
Rhsim07G0055300 Rhododendron simsii
Sabra09G0045500 Salix brachista
SalBow5G0402 Salvia bowleyana
SalBow5G3531 Salvia bowleyana
SalBow6G4991 Salvia bowleyana
SalBow8G4898 Salvia bowleyana
Sc10g0000050 Simmondsia chinensis
Sc11g0009210 Simmondsia chinensis
Sed0003633 Sechium edule
Sed0014658 Sechium edule
Sed0017110 Sechium edule
SEGI_22482 Sequoiadendron giganteum
SEGI_23171 Sequoiadendron giganteum
SGA_v2.0_scaffold24G10676 Striga asiatica
SGA_v2.0_scaffold5G02971 Striga asiatica
SHI04087 Sapria himalayana
SMO228G0064 Selaginella moellendorffii
Solyc01g087120.3 Solanum lycopersicum
Sopen01g034180 Solanum pennellii
Sp6g30570 Schrenkiella parvula
TAR623G0351 Trochodendron aralioides
TAR633G1993 Trochodendron aralioides
TAR633G2347 Trochodendron aralioides
THA.LOC104809854 Tarenaya hassleriana
THA.LOC104819071 Tarenaya hassleriana
Thecc.01G411300 Theobroma cacao
Thhalv10014516m.g Eutrema salsugineum
TPR.G12160 Trifolium pratense
TWI09G1021 Tripterygium wilfordii
TWI73G1179 Tripterygium wilfordii
unitig_8.g3624 Utricularia gibba
vmacro13664 Vaccinium macrocarpon
vmacro21185 Vaccinium macrocarpon
VMungo1080G1024 Vigna mungo
Zm00001eb188600 Zea mays

User provided reference genes

Program Settings