Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p29320 Brassica napus
A06p34930 Brassica napus
Aa31LG5G18010 Aethionema arabicum
Aa31sc38G120 Aethionema arabicum
Ah.13g077680 Amaranthus hybridus
AL3G18740 Arabidopsis lyrata
AL7G24650 Arabidopsis lyrata
Aqoxy3G01671 Aquilegia oxysepala
Aqoxy7G02205 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4AA542 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.52PG7K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NYJU0L Arachis hypogaea
AT3G07430 Arabidopsis thaliana
AT4G27990 Arabidopsis thaliana
ATR0598G008 Amborella trichopoda
ATR0749G012 Amborella trichopoda
Atru.chr10.322 Acer truncatum
Atru.chr10.339 Acer truncatum
Atru.chr4.1064 Acer truncatum
AUR62008132 Chenopodium quinoa
AUR62018499 Chenopodium quinoa
AUR62020921 Chenopodium quinoa
AUR62028714 Chenopodium quinoa
BcaB03g16171 Brassica carinata
BcaC05g28410 Brassica carinata
BcaC07g37253 Brassica carinata
BcaC07g37415 Brassica carinata
BcaNung01818 Brassica carinata
BcaNung01820 Brassica carinata
BNapus_Darmor_BZH_scaffold_109p00040 Brassica napus
BolC1t05549H Brassica oleracea
BolC5t33217H Brassica oleracea
BolC7t44889H Brassica oleracea
BolC8t47525H Brassica oleracea
BolC8t47739H Brassica oleracea
BraA01t04380Z Brassica rapa
BraA05t21825Z Brassica rapa
BraA06t26417Z Brassica rapa
C04p52640 Brassica napus
C05p44940 Brassica napus
C07p43620 Brassica napus
C08p06830 Brassica napus
C08p37970 Brassica napus
CAN.G874.26 Capsicum annuum
CANSAT01G2467 Cannabis sativa
CARHR078570 Cardamine hirsuta
CARHR082080 Cardamine hirsuta
Carub.0003s0698 Capsella rubella
Carub.0007s1281 Capsella rubella
Ca_20965_v3 Cicer arietinum L.
CBR_g19400 Chara braunii
Cc01_g16220 Coffea canephora
Cc01_g16230 Coffea canephora
CDE02G4486 Ceratophyllum demersum
CDE05G1038 Ceratophyllum demersum
Cfa013303 Carpinus fangiana
Ciclev10016703m.g Citrus clementina
Ciclev10033520m.g Citrus clementina
CiPaw.13G054600 Carya illinoinensis
CiPaw.14G043300 Carya illinoinensis
ClCG07G014610 Citrullus lanatus
Cpa.g.sc8.81 Carica papaya
Cre02.g080250 Chlamydomonas reinhardtii
Cre16.g684300 Chlamydomonas reinhardtii
CsaV3_3G030630 Cucumis sativus L.
CSS0024083 Camellia sinensis var. sinensis
DCAR_003383 Daucus carota
DCAR_003878 Daucus carota
DCAR_022129 Daucus carota
Dinv13676 Davidia involucrata
Duzib133G1035 Durio zibethinus
Duzib211G0344 Durio zibethinus
ECA233G3419 Erigeron canadensis
EL10Ac5g10641 Beta vulgaris
FAN02G3806 Fragaria x ananassa
FAN05G3499 Fragaria x ananassa
FAN09G2378 Fragaria x ananassa
FAN14G1834 Fragaria x ananassa
FvH4_6g37080 Fragaria vesca
Glyma.07G002700 Glycine max
Glyma.08G223900 Glycine max
Gohir.A07G090300 Gossypium hirsutum
Gohir.A11G142100 Gossypium hirsutum
Gohir.D07G095000 Gossypium hirsutum
Gohir.D11G148400 Gossypium hirsutum
Gorai.001G102300 Gossypium raimondii
Gorai.007G159100 Gossypium raimondii
GSVIVG01031640001 Vitis vinifera
GSVIVG01037857001 Vitis vinifera
HanXRQChr17g0556271 Helianthus annuus
Haze_21784 Corylus avellana
Hma1.2p1_0161F.1_g071320 Hydrangea macrophylla
Hma1.2p1_0161F.1_g071330 Hydrangea macrophylla
Hma1.2p1_0781F.1_g216900 Hydrangea macrophylla
HPP92_019020 Vanilla planifolia
HPP92_019774 Vanilla planifolia
Lalb_Chr20g0112681 Lupinus albus
Lj2P1118T62 Lonicera japonica
Lj3g0022091 Lotus japonicus
Lsat_1_v5_gn_8_128201 Lactuca sativa
Manes.13G053700 Manihot esculenta
Mapoly0008s0035 Marchantia polymorpha
MBI08_g10501_MAGBIO Magnolia biondii
MCO11G375 Micromonas commoda
MD09G1163500 Malus domestica
MD17G1164100 Malus domestica
Medtr4g005520 Medicago truncatula
MELO3C022654.2 Cucumis melo
MELO3C029414.2 Cucumis melo
Migut.D00725 Erythranthe guttata
Migut.D01988 Erythranthe guttata
Migut.J00451 Erythranthe guttata
Migut.N00661 Erythranthe guttata
MSTRG.17973 Avicennia marina
Nitab4.5_0000038g0070 Nicotiana tabacum
Nitab4.5_0002463g0050 Nicotiana tabacum
Nitab4.5_0004393g0050 Nicotiana tabacum
Nitab4.5_0008509g0010 Nicotiana tabacum
Nn3g18658 Nelumbo nucifera
Nn5g27563 Nelumbo nucifera
Oeu003635.1 Olea europaea
Oeu057847.1 Olea europaea
Os07g0185300 Oryza sativa ssp. japonica
PGR031G2843 Punica granatum
PGSC0003DMG400020113 Solanum tuberosum
Phvul.010G163400 Phaseolus vulgaris
Potri.002G250200 Populus trichocarpa
Pp3c10_6170 Physcomitrium patens
Pp3c14_5410 Physcomitrium patens
PRCOL_00004130 Prasinoderma coloniale
Prupe.3G021000 Prunus persica
Psat3g129280 Pisum sativum
Psat7g264400 Pisum sativum
PSO541G0049 Papaver somniferum
PSO675G2743 Papaver somniferum
PSO824G0043 Papaver somniferum
PSO832G2093 Papaver somniferum
QL08p061776 Quercus lobata
QL09p045921 Quercus lobata
QL09p045954 Quercus lobata
RcHm_v2.0_Chr2g0149631 Rosa chinensis
Rhsim01G0072900 Rhododendron simsii
Rhsim01G0073700 Rhododendron simsii
Rhsim09G0097000 Rhododendron simsii
Sabra02G0190500 Salix brachista
SalBow6G0539 Salvia bowleyana
Sc25g0005680 Simmondsia chinensis
Sed0008239 Sechium edule
Sed0026883 Sechium edule
SEGI_18696 Sequoiadendron giganteum
SGA_v2.0_scaffold8G04498 Striga asiatica
SHI10305 Sapria himalayana
SMO361G0364 Selaginella moellendorffii
Solyc06g083110.2 Solanum lycopersicum
Sopen06g034500 Solanum pennellii
Sp3g06360 Schrenkiella parvula
Sp7g09800 Schrenkiella parvula
TAR362G0123 Trochodendron aralioides
TAR365G1067 Trochodendron aralioides
TAR633G1936 Trochodendron aralioides
THA.LOC104804641 Tarenaya hassleriana
THA.LOC104826649 Tarenaya hassleriana
Thecc.01G211900 Theobroma cacao
Thhalv10021454m.g Eutrema salsugineum
Thhalv10026192m.g Eutrema salsugineum
TPR.G23545 Trifolium pratense
TPR.G38809 Trifolium pratense
TWI18G0741 Tripterygium wilfordii
TWI36G1715 Tripterygium wilfordii
unitig_0.g411 Utricularia gibba
unitig_60.g25578 Utricularia gibba
vmacro02812 Vaccinium macrocarpon
vmacro03028 Vaccinium macrocarpon
vmacro15744 Vaccinium macrocarpon
VMungo0331G1295 Vigna mungo
Zm00001eb301730 Zea mays

User provided reference genes

Program Settings