Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p32690 Brassica napus
A05p26360 Brassica napus
A09p67460 Brassica napus
A10p04070 Brassica napus
Aa31LG1G19250 Aethionema arabicum
Aa31LG8G8940 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.2611 Anthoceros agrestis
Actinidia08494 Actinidia chinensis
Actinidia23507 Actinidia chinensis
Actinidia36962 Actinidia chinensis
Actinidia36963 Actinidia chinensis
Actinidia40151 Actinidia chinensis
Ah.04g154530 Amaranthus hybridus
Ah.13g073820 Amaranthus hybridus
AL1G15190 Arabidopsis lyrata
AL3G36680 Arabidopsis lyrata
Aqoxy5G00479 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.6SSG9H Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9RDP1W Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EDPG13 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K10YKQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KTSS0P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V722W1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X5EF0Z Arachis hypogaea
AT1G05370 Arabidopsis thaliana
AT3G22410 Arabidopsis thaliana
ATR0737G092 Amborella trichopoda
Atru.chr4.2476 Acer truncatum
Atru.ctg752_3.90 Acer truncatum
AUR62033612 Chenopodium quinoa
BcaB04g20519 Brassica carinata
BcaB06g26342 Brassica carinata
BcaC05g28076 Brassica carinata
BcaC07g42133 Brassica carinata
BcaC09g49172 Brassica carinata
BolC1t04141H Brassica oleracea
BolC5t29146H Brassica oleracea
BolC5t32840H Brassica oleracea
BolC8t52703H Brassica oleracea
BraA01t03397Z Brassica rapa
BraA05t21511Z Brassica rapa
BraA09t42074Z Brassica rapa
BraA10t42678Z Brassica rapa
C01p41880 Brassica napus
C05p03710 Brassica napus
C05p40990 Brassica napus
C08p51740 Brassica napus
CAN.G907.4 Capsicum annuum
CANSAT78G1057 Cannabis sativa
CARHR004880 Cardamine hirsuta
CARHR098300 Cardamine hirsuta
Carub.0001s0471 Capsella rubella
Carub.0003s2257 Capsella rubella
Ca_10910_v3 Cicer arietinum L.
Cc03_g03700 Coffea canephora
CDE10G0336 Ceratophyllum demersum
CDE10G1225 Ceratophyllum demersum
Cfa015636 Carpinus fangiana
Ciclev10005024m.g Citrus clementina
CiPaw.01G165200 Carya illinoinensis
CiPaw.02G096900 Carya illinoinensis
ClCG05G005190 Citrullus lanatus
COL.COLO4_05309 Corchorus olitorius
Cpa.g.sc58.116 Carica papaya
CsaV3_3G013370 Cucumis sativus L.
CSS0001637 Camellia sinensis var. sinensis
CSS0032523 Camellia sinensis var. sinensis
DCAR_002388 Daucus carota
DCAR_017426 Daucus carota
DCAR_027211 Daucus carota
DCAR_030632 Daucus carota
Dinv13990 Davidia involucrata
Dinv44530 Davidia involucrata
Duzib052G0053 Durio zibethinus
Duzib151G0309 Durio zibethinus
Duzib212G0915 Durio zibethinus
ECA234G0180 Erigeron canadensis
EL10Ac3g06424 Beta vulgaris
Eucgr.H03517 Eucalyptus grandis
FAN07G0246 Fragaria x ananassa
FAN12G2300 Fragaria x ananassa
FAN17G1073 Fragaria x ananassa
FAN22G1591 Fragaria x ananassa
FvH4_4g15420 Fragaria vesca
Glyma.10G248600 Glycine max
Glyma.20G145500 Glycine max
Gohir.A02G031600 Gossypium hirsutum
Gohir.D02G038300 Gossypium hirsutum
Gorai.005G042200 Gossypium raimondii
GSVIVG01017963001 Vitis vinifera
HanXRQChr04g0109101 Helianthus annuus
HanXRQChr10g0296391 Helianthus annuus
Haze_00908 Corylus avellana
Hma1.2p1_0745F.1_g211890 Hydrangea macrophylla
Hma1.2p1_0745F.1_g211900 Hydrangea macrophylla
HPP92_007926 Vanilla planifolia
Hund12136 Selenicereus undatus
Lalb_Chr05g0210961 Lupinus albus
Lj5g0020823 Lotus japonicus
Lj6A609T80 Lonicera japonica
Lsat_1_v5_gn_5_148741 Lactuca sativa
Manes.03G179600 Manihot esculenta
Manes.15G028400 Manihot esculenta
Mapoly0016s0069 Marchantia polymorpha
MBI04_g20819_MAGBIO Magnolia biondii
MD13G1192100 Malus domestica
MD16G1192700 Malus domestica
Medtr1g104540 Medicago truncatula
MELO3C006535.2 Cucumis melo
Migut.G00334 Erythranthe guttata
Migut.N00179 Erythranthe guttata
MSTRG.4028 Avicennia marina
MSTRG.9986 Avicennia marina
Nitab4.5_0000043g0220 Nicotiana tabacum
Nitab4.5_0000321g0090 Nicotiana tabacum
Nitab4.5_0004283g0010 Nicotiana tabacum
Nn1g02291 Nelumbo nucifera
Nn4g26303 Nelumbo nucifera
Oeu023394.1 Olea europaea
Oeu031235.1 Olea europaea
Oeu050277.1 Olea europaea
Os03g0219100 Oryza sativa ssp. japonica
Peaxi162Scf00092g01211 Petunia axillaris
Peaxi162Scf00642g00006 Petunia axillaris
PGR004G2370 Punica granatum
PGSC0003DMG400030080 Solanum tuberosum
Phvul.002G046000 Phaseolus vulgaris
Phvul.007G056700 Phaseolus vulgaris
Potri.008G152100 Populus trichocarpa
Potri.010G088300 Populus trichocarpa
Pp3c16_18230 Physcomitrium patens
Pp3c1_24930 Physcomitrium patens
Pp3c25_7490 Physcomitrium patens
Pp3c6_16090 Physcomitrium patens
Prupe.1G012800 Prunus persica
Psat6g208040 Pisum sativum
PSO210G4025 Papaver somniferum
PSO832G1325 Papaver somniferum
QL06p002667 Quercus lobata
RcHm_v2.0_Chr4g0416361 Rosa chinensis
Rhsim02G0023600 Rhododendron simsii
Rhsim04G0203000 Rhododendron simsii
Sabra08G0115900 Salix brachista
Sabra10G0054500 Salix brachista
SalBow2G1240 Salvia bowleyana
SalBow2G2398 Salvia bowleyana
SalBow3G0892 Salvia bowleyana
Sc13g0004340 Simmondsia chinensis
Sc19g0004200 Simmondsia chinensis
Sed0004334 Sechium edule
Sed0007259 Sechium edule
SGA_v2.0_scaffold39G15244 Striga asiatica
SHI00429 Sapria himalayana
SMO347G0581 Selaginella moellendorffii
Solyc09g075970.3 Solanum lycopersicum
Sopen09g030800 Solanum pennellii
Sp1g04240 Schrenkiella parvula
Sp3g20170 Schrenkiella parvula
TAR362G0627 Trochodendron aralioides
TAR365G0124 Trochodendron aralioides
TAR633G2096 Trochodendron aralioides
THA.LOC104801547 Tarenaya hassleriana
THA.LOC104808538 Tarenaya hassleriana
THA.LOC104826163 Tarenaya hassleriana
Thecc.04G230700 Theobroma cacao
Thhalv10007749m.g Eutrema salsugineum
Thhalv10020858m.g Eutrema salsugineum
TPR.G5481 Trifolium pratense
TWI73G0616 Tripterygium wilfordii
unitig_41.g31645 Utricularia gibba
unitig_748.g8337 Utricularia gibba
unitig_748.g8543 Utricularia gibba
VMungo0720G2903 Vigna mungo
VMungo1215G0448 Vigna mungo
Zm00001eb008830 Zea mays
Zm00001eb400000 Zea mays

User provided reference genes

Program Settings