Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p20210 Brassica napus
A06p13490 Brassica napus
A06p46130 Brassica napus
A09p22150 Brassica napus
Aa31LG9G6750 Aethionema arabicum
Actinidia11225 Actinidia chinensis
AL1G29870 Arabidopsis lyrata
AL8G12320 Arabidopsis lyrata
Aqoxy5G00859 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.9F1UYE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y6E9TB Arachis hypogaea
AT1G17560 Arabidopsis thaliana
AT5G46160 Arabidopsis thaliana
ATR1098G090 Amborella trichopoda
Atru.chr10.1163 Acer truncatum
Atru.chr6.2792 Acer truncatum
AUR62008996 Chenopodium quinoa
AUR62023305 Chenopodium quinoa
BcaB06g29609 Brassica carinata
BcaB07g30850 Brassica carinata
BcaC02g08310 Brassica carinata
BcaC04g21721 Brassica carinata
BcaC04g21723 Brassica carinata
BcaC05g25681 Brassica carinata
BolC4t27125H Brassica oleracea
BolC5t30301H Brassica oleracea
BolC7t43476H Brassica oleracea
BolC9t55706H Brassica oleracea
BraA04t17600Z Brassica rapa
BraA06t24501Z Brassica rapa
BraA06t27478Z Brassica rapa
BraA09t37819Z Brassica rapa
C04p55920 Brassica napus
C05p15990 Brassica napus
C07p29340 Brassica napus
C07p29360 Brassica napus
C09p28280 Brassica napus
C09p28310 Brassica napus
CAN.G78.20 Capsicum annuum
CANSAT78G0994 Cannabis sativa
CARHR018170 Cardamine hirsuta
CARHR175640 Cardamine hirsuta
Carub.0001s1733 Capsella rubella
Carub.0008s0176 Capsella rubella
Ca_02566_v3 Cicer arietinum L.
Ca_14614_v3 Cicer arietinum L.
Ca_20413_v3 Cicer arietinum L.
Cc03_g11360 Coffea canephora
Cfa000921 Carpinus fangiana
Cfa007957 Carpinus fangiana
Ciclev10013319m.g Citrus clementina
Ciclev10016904m.g Citrus clementina
CiPaw.01G168000 Carya illinoinensis
CiPaw.02G098600 Carya illinoinensis
ClCG01G024770 Citrullus lanatus
ClCG09G005460 Citrullus lanatus
COL.COLO4_27612 Corchorus olitorius
COL.COLO4_31035 Corchorus olitorius
Cpa.g.sc318.3 Carica papaya
Cre12.g550650 Chlamydomonas reinhardtii
CsaV3_2G033220 Cucumis sativus L.
CsaV3_6G051890 Cucumis sativus L.
CSS0003471 Camellia sinensis var. sinensis
CSS0022821 Camellia sinensis var. sinensis
CSS0027065 Camellia sinensis var. sinensis
CSS0046336 Camellia sinensis var. sinensis
DCAR_003897 Daucus carota
DCAR_007879 Daucus carota
Dinv21544 Davidia involucrata
Dinv44648 Davidia involucrata
Duzib160G0826 Durio zibethinus
ECA238G0620 Erigeron canadensis
EL10Ac2g04579 Beta vulgaris
Eucgr.D02617 Eucalyptus grandis
FAN15G2904 Fragaria x ananassa
FAN24G0220 Fragaria x ananassa
FvH4_2g09650 Fragaria vesca
Glyma.08G310400 Glycine max
Glyma.18G105500 Glycine max
Gohir.A05G147200 Gossypium hirsutum
Gohir.A10G042520 Gossypium hirsutum
Gohir.D05G149700 Gossypium hirsutum
Gohir.D10G043500 Gossypium hirsutum
Gorai.009G153800 Gossypium raimondii
Gorai.011G046200 Gossypium raimondii
GSVIVG01021529001 Vitis vinifera
HanXRQChr06g0183951 Helianthus annuus
HanXRQChr14g0428081 Helianthus annuus
Haze_05634 Corylus avellana
Hma1.2p1_0594F.1_g185820 Hydrangea macrophylla
HPP92_006051 Vanilla planifolia
Hund07898 Selenicereus undatus
Hund14612 Selenicereus undatus
Lalb_Chr02g0149491 Lupinus albus
Lalb_Chr17g0348321 Lupinus albus
Lj1g0018458 Lotus japonicus
Lj6g0000074 Lotus japonicus
Lj7C343T5 Lonicera japonica
Lsat_1_v5_gn_8_26321 Lactuca sativa
Lsat_1_v5_gn_8_55401 Lactuca sativa
Manes.06G164300 Manihot esculenta
Manes.17G072900 Manihot esculenta
Mapoly0049s0104 Marchantia polymorpha
MBI02_g21427_MAGBIO Magnolia biondii
MBI19_g14526_MAGBIO Magnolia biondii
MBI19_g34081_MAGBIO Magnolia biondii
MD05G1061000 Malus domestica
MD10G1068800 Malus domestica
Medtr5g007240 Medicago truncatula
Medtr5g096490 Medicago truncatula
MELO3C007120.2 Cucumis melo
MELO3C008092.2 Cucumis melo
Migut.M00890 Erythranthe guttata
MSTRG.16258 Avicennia marina
Nitab4.5_0006013g0050 Nicotiana tabacum
Nn8g40928 Nelumbo nucifera
Oeu040095.1 Olea europaea
Os12g0616200 Oryza sativa ssp. japonica
Peaxi162Scf00194g00015 Petunia axillaris
Peaxi162Scf00285g00076 Petunia axillaris
Peaxi162Scf00397g00428 Petunia axillaris
Peaxi162Scf00875g00226 Petunia axillaris
Peaxi162Scf68880g00001 Petunia axillaris
PGR031G0007 Punica granatum
PGR031G1984 Punica granatum
PGSC0003DMG400005217 Solanum tuberosum
PGSC0003DMG401005640 Solanum tuberosum
PGSC0003DMG403005640 Solanum tuberosum
Phvul.006G034600 Phaseolus vulgaris
Potri.003G096525 Populus trichocarpa
Potri.010G022800 Populus trichocarpa
Pp3c1_40490 Physcomitrium patens
Prupe.1G558000 Prunus persica
Psat4g176520 Pisum sativum
Psat5g207880 Pisum sativum
PSO170G0011 Papaver somniferum
QL02p022953 Quercus lobata
QL05p055594 Quercus lobata
QL05p055692 Quercus lobata
QL06p001969 Quercus lobata
RcHm_v2.0_Chr1g0329391 Rosa chinensis
Sabra03G0065100 Salix brachista
Sabra10G0015600 Salix brachista
SalBow8G3772 Salvia bowleyana
Sc23g0005280 Simmondsia chinensis
Sed0017497 Sechium edule
SEGI_39130 Sequoiadendron giganteum
SGA_v2.0_scaffold1G00198 Striga asiatica
SGA_v2.0_scaffold223G42820 Striga asiatica
SHI24849 Sapria himalayana
SMO353G0324 Selaginella moellendorffii
Solyc03g119380.3 Solanum lycopersicum
Sopen01g030960 Solanum pennellii
Sopen03g038250 Solanum pennellii
Sp1g15700 Schrenkiella parvula
Sp2g11020 Schrenkiella parvula
Sp7g10490 Schrenkiella parvula
TAR460G0004 Trochodendron aralioides
TAR627G0457 Trochodendron aralioides
TAR627G1037 Trochodendron aralioides
THA.LOC104806134 Tarenaya hassleriana
Thecc.02G307600 Theobroma cacao
Thecc.06G147200 Theobroma cacao
Thhalv10000352m.g Eutrema salsugineum
Thhalv10001156m.g Eutrema salsugineum
Thhalv10008890m.g Eutrema salsugineum
TPR.G37990 Trifolium pratense
TWI36G1148 Tripterygium wilfordii
TWI75G0958 Tripterygium wilfordii
unitig_26.g9764 Utricularia gibba
vmacro20058 Vaccinium macrocarpon
VMungo0540G0008 Vigna mungo
Zm00001eb134780 Zea mays
Zm00001eb189880 Zea mays
Zm00001eb276960 Zea mays
Zm00001eb333870 Zea mays

User provided reference genes

Program Settings