Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p43180 Brassica napus
A04p07580 Brassica napus
A07p09330 Brassica napus
A10p02740 Brassica napus
Aa31LG1G20540 Aethionema arabicum
Aa31LG8G9650 Aethionema arabicum
Aa31LG9G2850 Aethionema arabicum
Actinidia04462 Actinidia chinensis
AL1G13930 Arabidopsis lyrata
AL3G37790 Arabidopsis lyrata
AL7G41690 Arabidopsis lyrata
Aqoxy2G03616 Aquilegia oxysepala
Aqoxy5G00265 Aquilegia oxysepala
AT1G04330 Arabidopsis thaliana
AT3G23170 Arabidopsis thaliana
AT4G14450 Arabidopsis thaliana
ATR0680G398 Amborella trichopoda
Atru.chr4.2138 Acer truncatum
AUR62002262 Chenopodium quinoa
BcaB02g08606 Brassica carinata
BcaB06g26449 Brassica carinata
BcaC02g09310 Brassica carinata
BcaC05g24452 Brassica carinata
BcaC07g42173 Brassica carinata
BcaC07g42193 Brassica carinata
BolC4t25705H Brassica oleracea
BolC5t29030H Brassica oleracea
BolC7t41935H Brassica oleracea
BraA03t13459Z Brassica rapa
BraA04t16449Z Brassica rapa
BraA07t28731Z Brassica rapa
BraA10t42542Z Brassica rapa
C04p41270 Brassica napus
C05p02510 Brassica napus
C07p14380 Brassica napus
CAN.G738.11 Capsicum annuum
CAN.G793.6 Capsicum annuum
CANSAT78G1835 Cannabis sativa
CARHR003650 Cardamine hirsuta
CARHR099110 Cardamine hirsuta
CARHR220660 Cardamine hirsuta
Carub.0001s0351 Capsella rubella
Carub.0003s2339 Capsella rubella
Carub.0007s2777 Capsella rubella
Ca_05393_v3 Cicer arietinum L.
Ca_09815_v3 Cicer arietinum L.
Cc03_g05120 Coffea canephora
Cfa008351 Carpinus fangiana
Ciclev10006290m.g Citrus clementina
CiPaw.01G188000 Carya illinoinensis
CiPaw.02G114800 Carya illinoinensis
ClCG05G004480 Citrullus lanatus
ClCG06G006840 Citrullus lanatus
COL.COLO4_15828 Corchorus olitorius
Cpa.g.sc44.90 Carica papaya
CsaV3_2G012950 Cucumis sativus L.
CSS0017531 Camellia sinensis var. sinensis
CSS0034657 Camellia sinensis var. sinensis
DCAR_027292 Daucus carota
DCAR_027293 Daucus carota
Dinv44656 Davidia involucrata
Duzib151G0370 Durio zibethinus
Duzib212G0271 Durio zibethinus
ECA233G6082 Erigeron canadensis
EL10Ac3g05913 Beta vulgaris
Eucgr.H03139 Eucalyptus grandis
FAN09G4337 Fragaria x ananassa
FAN12G3937 Fragaria x ananassa
FAN17G0281 Fragaria x ananassa
FAN17G2041 Fragaria x ananassa
FAN22G2069 Fragaria x ananassa
FAN26G1611 Fragaria x ananassa
FvH4_4g03100 Fragaria vesca
FvH4_7g33480 Fragaria vesca
Glyma.10G008021 Glycine max
Glyma.10G188200 Glycine max
Glyma.20G202600 Glycine max
Gohir.A02G037100 Gossypium hirsutum
Gohir.A09G057700 Gossypium hirsutum
Gohir.A09G225100 Gossypium hirsutum
Gohir.A10G112500 Gossypium hirsutum
Gohir.D02G043800 Gossypium hirsutum
Gohir.D09G056900 Gossypium hirsutum
Gohir.D09G226800 Gossypium hirsutum
Gohir.D10G154400 Gossypium hirsutum
Gorai.005G048200 Gossypium raimondii
Gorai.006G070500 Gossypium raimondii
Gorai.006G248700 Gossypium raimondii
Gorai.011G172300 Gossypium raimondii
HanXRQChr03g0092241 Helianthus annuus
HanXRQChr13g0425481 Helianthus annuus
Haze_11334 Corylus avellana
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla
Lalb_Chr03g0037101 Lupinus albus
Lalb_Chr19g0128361 Lupinus albus
Lalb_Chr21g0312371 Lupinus albus
Lj5g0009696 Lotus japonicus
Lj6g0004880 Lotus japonicus
Lsat_1_v5_gn_3_122140 Lactuca sativa
Lsat_1_v5_gn_5_72560 Lactuca sativa
Manes.03G167050 Manihot esculenta
Manes.15G038200 Manihot esculenta
MBI18_g43342_MAGBIO Magnolia biondii
MD13G1210200 Malus domestica
MD16G1213100 Malus domestica
Medtr1g044125 Medicago truncatula
Medtr1g073910 Medicago truncatula
MELO3C022975.2 Cucumis melo
Migut.G00451 Erythranthe guttata
Migut.G00452 Erythranthe guttata
Migut.N00250 Erythranthe guttata
MSTRG.9915 Avicennia marina
Nitab4.5_0000342g0180 Nicotiana tabacum
Nitab4.5_0007234g0020 Nicotiana tabacum
Nn1g00062 Nelumbo nucifera
Nn1g02702 Nelumbo nucifera
Nn3g19606 Nelumbo nucifera
Oeu025569.1 Olea europaea
Oeu063884.1 Olea europaea
Peaxi162Scf00024g01711 Petunia axillaris
Peaxi162Scf00325g00012 Petunia axillaris
Peaxi162Scf00325g00015 Petunia axillaris
PGR004G1022 Punica granatum
PGR031G1035 Punica granatum
PGSC0003DMG400013448 Solanum tuberosum
PGSC0003DMG400016324 Solanum tuberosum
PGSC0003DMG400017255 Solanum tuberosum
Phvul.007G129450 Phaseolus vulgaris
Phvul.007G272100 Phaseolus vulgaris
Potri.008G164801 Populus trichocarpa
Potri.010G073900 Populus trichocarpa
Prupe.1G034700 Prunus persica
Psat6g132880 Pisum sativum
Psat6g138240 Pisum sativum
PSO210G0601 Papaver somniferum
QL06p016655 Quercus lobata
RcHm_v2.0_Chr4g0391391 Rosa chinensis
Rhsim04G0188200 Rhododendron simsii
Sabra10G0034600 Salix brachista
SalBow2G1766 Salvia bowleyana
SalBow3G4424 Salvia bowleyana
Sc13g0005150 Simmondsia chinensis
Sc19g0003500 Simmondsia chinensis
Sc25g0004050 Simmondsia chinensis
Sed0000021 Sechium edule
Sed0008236 Sechium edule
Sed0016632 Sechium edule
SGA_v2.0_scaffold101G29832 Striga asiatica
SHI00703 Sapria himalayana
Solyc06g053700.1 Solanum lycopersicum
Solyc09g089650.1 Solanum lycopersicum
Sopen06g018810 Solanum pennellii
Sopen09g032590 Solanum pennellii
Sp1g03140 Schrenkiella parvula
Sp3g20820 Schrenkiella parvula
Sp7g12530 Schrenkiella parvula
TAR362G0514 Trochodendron aralioides
TAR365G0320 Trochodendron aralioides
TAR602G0001 Trochodendron aralioides
TAR636G1753 Trochodendron aralioides
THA.LOC104808609 Tarenaya hassleriana
THA.LOC104822248 Tarenaya hassleriana
THA.LOC104822808 Tarenaya hassleriana
Thecc.04G250000 Theobroma cacao
Thhalv10009178m.g Eutrema salsugineum
Thhalv10021654m.g Eutrema salsugineum
Thhalv10027546m.g Eutrema salsugineum
TPR.G15869 Trifolium pratense
TWI09G0780 Tripterygium wilfordii
TWI53G1738 Tripterygium wilfordii
TWI53G1893 Tripterygium wilfordii
TWI73G0411 Tripterygium wilfordii
unitig_32.g11714 Utricularia gibba
unitig_33.g30216 Utricularia gibba
vmacro08448 Vaccinium macrocarpon
VMungo0720G0726 Vigna mungo

User provided reference genes

Program Settings