Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p23300 Brassica napus
A06p11880 Brassica napus
A07p45080 Brassica napus
A09p61160 Brassica napus
Aa31LG4G900 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.728 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.3374 Anthoceros agrestis
Actinidia18230 Actinidia chinensis
Actinidia25443 Actinidia chinensis
Ah.02g127880 Amaranthus hybridus
AL1040U10010 Arabidopsis lyrata
AL1040U10020 Arabidopsis lyrata
AL1G27960 Arabidopsis lyrata
AL2G40830 Arabidopsis lyrata
Aqoxy7G03521 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.17KRJ7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6RSI2J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9YJ9LX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZV9XE5 Arachis hypogaea
AT1G15810 Arabidopsis thaliana
AT1G80620 Arabidopsis thaliana
ATR0584G049 Amborella trichopoda
Atru.chr10.2382 Acer truncatum
AUR62011450 Chenopodium quinoa
AUR62016607 Chenopodium quinoa
BcaB05g25239 Brassica carinata
BcaB05g25240 Brassica carinata
BcaC03g15942 Brassica carinata
BcaC07g41479 Brassica carinata
BolC2t09719H Brassica oleracea
BolC5t30137H Brassica oleracea
BolC6t40405H Brassica oleracea
BolC8t52022H Brassica oleracea
BraA02t07326Z Brassica rapa
BraA06t24358Z Brassica rapa
BraA07t32011Z Brassica rapa
BraA09t41490Z Brassica rapa
C02p37040 Brassica napus
C05p14060 Brassica napus
C06p53910 Brassica napus
C08p44760 Brassica napus
CANSAT11G1020 Cannabis sativa
CARHR016320 Cardamine hirsuta
CARHR073900 Cardamine hirsuta
Carub.0001s1560 Capsella rubella
Carub.0002s2693 Capsella rubella
Ca_25898_v3 Cicer arietinum L.
Ca_29111_v3 Cicer arietinum L.
Ca_29510_v3 Cicer arietinum L.
Ca_31319_v3 Cicer arietinum L.
CBR_g28475 Chara braunii
CBR_g28520 Chara braunii
Cc04_g04830 Coffea canephora
CDE02G1505 Ceratophyllum demersum
CDE09G0364 Ceratophyllum demersum
CDE09G0975 Ceratophyllum demersum
CDE09G1350 Ceratophyllum demersum
Cfa001907 Carpinus fangiana
Cfa001908 Carpinus fangiana
Ciclev10025627m.g Citrus clementina
CiPaw.01G252100 Carya illinoinensis
CiPaw.02G160600 Carya illinoinensis
ClCG07G012350 Citrullus lanatus
COL.COLO4_11826 Corchorus olitorius
Cpa.g.sc10.123 Carica papaya
Cre06.g264300 Chlamydomonas reinhardtii
Cre17.g731250 Chlamydomonas reinhardtii
CsaV3_4G001790 Cucumis sativus L.
CSS0006918 Camellia sinensis var. sinensis
DCAR_016286 Daucus carota
Dinv23312 Davidia involucrata
Dinv30485 Davidia involucrata
Duzib212G0318 Durio zibethinus
ECA232G5052 Erigeron canadensis
EL10Ac4g08132 Beta vulgaris
EL10Ac4g08139 Beta vulgaris
EL10Ac4g08736 Beta vulgaris
EL10Ac4g09432 Beta vulgaris
EL10Ac4g09849 Beta vulgaris
EL10Ac8g20467 Beta vulgaris
EL10Ac9g21843 Beta vulgaris
Eucgr.F03943 Eucalyptus grandis
FAN02G3242 Fragaria x ananassa
FAN05G0608 Fragaria x ananassa
FAN05G1488 Fragaria x ananassa
FAN09G0504 Fragaria x ananassa
FAN14G5707 Fragaria x ananassa
FvH4_6g28960 Fragaria vesca
Glyma.07G026400 Glycine max
Glyma.08G216000 Glycine max
Glyma.08G216100 Glycine max
Gohir.A06G183700 Gossypium hirsutum
Gohir.D06G190700 Gossypium hirsutum
Gorai.010G223800 Gossypium raimondii
GSVIVG01026722001 Vitis vinifera
GSVIVG01026738001 Vitis vinifera
HanXRQChr13g0409191 Helianthus annuus
HanXRQChr16g0500031 Helianthus annuus
Hma1.2p1_0135F.1_g061770 Hydrangea macrophylla
HPP92_027846 Vanilla planifolia
Hund00590 Selenicereus undatus
Lalb_Chr25g0279171 Lupinus albus
Lj2A141T58 Lonicera japonica
Lj3g0027357 Lotus japonicus
Lj6C264T3 Lonicera japonica
Lj9A496T67 Lonicera japonica
Lsat_1_v5_gn_1_31700 Lactuca sativa
Lsat_1_v5_gn_8_9281 Lactuca sativa
Manes.04G106400 Manihot esculenta
Mapoly0065s0028 Marchantia polymorpha
MBI14_g15650_MAGBIO Magnolia biondii
MCO16G694 Micromonas commoda
MD09G1223400 Malus domestica
MD17G1219800 Malus domestica
Medtr4g009100 Medicago truncatula
MELO3C017854.2 Cucumis melo
Migut.I00724 Erythranthe guttata
MSTRG.11168 Avicennia marina
Nitab4.5_0000114g0150 Nicotiana tabacum
Nitab4.5_0009138g0020 Nicotiana tabacum
Nitab4.5_0012293g0020 Nicotiana tabacum
Nitab4.5_0012293g0040 Nicotiana tabacum
Nn2g12258 Nelumbo nucifera
Oeu029910.1 Olea europaea
Os02g0803200 Oryza sativa ssp. japonica
Os03g0293850 Oryza sativa ssp. japonica
Os06g0176150 Oryza sativa ssp. japonica
Os06g0177250 Oryza sativa ssp. japonica
Peaxi162Scf00045g02127 Petunia axillaris
PGR102G1525 Punica granatum
Phvul.010G158900 Phaseolus vulgaris
Potri.003G178800 Populus trichocarpa
Pp3c1_21620 Physcomitrium patens
PRCOL_00001607 Prasinoderma coloniale
Prupe.3G095300 Prunus persica
Psat7g258560 Pisum sativum
PSO210G7358 Papaver somniferum
PSO478G0782 Papaver somniferum
PSO782G4560 Papaver somniferum
PSO832G3729 Papaver somniferum
QL05p034110 Quercus lobata
QL08p064442 Quercus lobata
QL08p064447 Quercus lobata
RcHm_v2.0_Chr2g0133511 Rosa chinensis
RcHm_v2.0_Chr2g0145231 Rosa chinensis
RcHm_v2.0_Chr2g0171141 Rosa chinensis
RcHm_v2.0_Chr4g0407691 Rosa chinensis
RcHm_v2.0_Chr6g0246971 Rosa chinensis
Rhsim08G0208400 Rhododendron simsii
Sabra03G0131100 Salix brachista
SalBow6G1756 Salvia bowleyana
SalBow6G6295 Salvia bowleyana
Sc10g0006130 Simmondsia chinensis
Sed0007390 Sechium edule
Sed0026159 Sechium edule
SEGI_32691 Sequoiadendron giganteum
SGA_v2.0_scaffold5G02746 Striga asiatica
SHI11258 Sapria himalayana
SMO164G0146 Selaginella moellendorffii
SMO172G0122 Selaginella moellendorffii
Solyc08g006840.3 Solanum lycopersicum
Sopen08g002790 Solanum pennellii
Sp1g14110 Schrenkiella parvula
Sp5g35150 Schrenkiella parvula
TAR636G3155 Trochodendron aralioides
THA.LOC104812450 Tarenaya hassleriana
Thecc.06G036500 Theobroma cacao
Thhalv10007635m.g Eutrema salsugineum
Thhalv10018593m.g Eutrema salsugineum
TPR.G29720 Trifolium pratense
TWI12G0163 Tripterygium wilfordii
unitig_27.g24954 Utricularia gibba
vmacro17364 Vaccinium macrocarpon
vmacro19035 Vaccinium macrocarpon
VMungo0331G1494 Vigna mungo
Zm00001eb192140 Zea mays
Zm00001eb320360 Zea mays

User provided reference genes

Program Settings