Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p47100 Brassica napus
Aa31LG11G1910 Aethionema arabicum
Aa31LG3G18800 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_369.216 Anthoceros agrestis
Actinidia01047 Actinidia chinensis
Actinidia10778 Actinidia chinensis
Actinidia13591 Actinidia chinensis
Actinidia24986 Actinidia chinensis
Ah.07g207480 Amaranthus hybridus
AL7G47000 Arabidopsis lyrata
AL8G38190 Arabidopsis lyrata
Aqoxy7G00829 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.16SP4W Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.2B4GQV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9TCX0P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VY970J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W2J7UU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XHAQ77 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YZL4IN Arachis hypogaea
AT5G61500 Arabidopsis thaliana
ATR0057G070 Amborella trichopoda
Atru.chr1.845 Acer truncatum
Atru.chr2.3021 Acer truncatum
AUR62002246 Chenopodium quinoa
AUR62015457 Chenopodium quinoa
BcaB01g00746 Brassica carinata
BcaB05g21604 Brassica carinata
BcaB05g21605 Brassica carinata
BcaC03g13194 Brassica carinata
BcaC03g17887 Brassica carinata
BcaC04g19029 Brassica carinata
BcaC04g21123 Brassica carinata
BcaC06g33155 Brassica carinata
BcaC06g33158 Brassica carinata
BcaC09g49081 Brassica carinata
BolC2t06285H Brassica oleracea
BolC7t45044H Brassica oleracea
BraA02t04926Z Brassica rapa
BraA03t13837Z Brassica rapa
C03p26610 Brassica napus
C07p45210 Brassica napus
CAN.G330.5 Capsicum annuum
CANSAT21G2109 Cannabis sativa
CARHR275270 Cardamine hirsuta
Carub.0008s2219 Capsella rubella
Ca_12623_v3 Cicer arietinum L.
CBR_g28076 Chara braunii
CBR_g28077 Chara braunii
Cc02_g04470 Coffea canephora
CDE04G2838 Ceratophyllum demersum
Cfa012922 Carpinus fangiana
Ciclev10005442m.g Citrus clementina
CiPaw.07G237000 Carya illinoinensis
CiPaw.14G023500 Carya illinoinensis
ClCG06G002480 Citrullus lanatus
COL.COLO4_12445 Corchorus olitorius
Cpa.g.sc16.168 Carica papaya
Cre02.g102350 Chlamydomonas reinhardtii
CsaV3_4G004080 Cucumis sativus L.
CsaV3_6G008640 Cucumis sativus L.
CSS0045715 Camellia sinensis var. sinensis
CSS0046772 Camellia sinensis var. sinensis
DCAR_020181 Daucus carota
Dinv06578 Davidia involucrata
Dinv16851 Davidia involucrata
Duzib133G0969 Durio zibethinus
Duzib138G0818 Durio zibethinus
ECA232G4201 Erigeron canadensis
EL10Ac3g05885 Beta vulgaris
Eucgr.K00175 Eucalyptus grandis
FAN01G1603 Fragaria x ananassa
FAN03G1633 Fragaria x ananassa
FAN06G4162 Fragaria x ananassa
FAN06G5089 Fragaria x ananassa
FAN10G2569 Fragaria x ananassa
FAN10G4028 Fragaria x ananassa
FvH4_7g09530 Fragaria vesca
Glyma.09G231000 Glycine max
Glyma.12G005700 Glycine max
Gohir.A07G148000 Gossypium hirsutum
Gohir.A08G137866 Gossypium hirsutum
Gohir.D07G154200 Gossypium hirsutum
Gohir.D08G159150 Gossypium hirsutum
Gorai.001G176400 Gossypium raimondii
Gorai.004G165200 Gossypium raimondii
GSVIVG01018224001 Vitis vinifera
HanXRQChr15g0485951 Helianthus annuus
HanXRQChr16g0512861 Helianthus annuus
Haze_02753 Corylus avellana
Haze_21276 Corylus avellana
Haze_27326 Corylus avellana
Hma1.2p1_0432F.1_g151940 Hydrangea macrophylla
Hma1.2p1_1132F.1_g260170 Hydrangea macrophylla
Hund04562 Selenicereus undatus
Lalb_Chr01g0000281 Lupinus albus
Lalb_Chr19g0126281 Lupinus albus
Lj1C977G12 Lonicera japonica
Lj3g0013928 Lotus japonicus
Lsat_1_v5_gn_5_9340 Lactuca sativa
Lsat_1_v5_gn_9_51820 Lactuca sativa
Manes.06G132800 Manihot esculenta
Mapoly0003s0208 Marchantia polymorpha
MCO14G260 Micromonas commoda
MD02G1218100 Malus domestica
MD07G1099000 Malus domestica
MD07G1099100 Malus domestica
Medtr4g036265 Medicago truncatula
MELO3C022280.2 Cucumis melo
MELO3C032833.2 Cucumis melo
Migut.F00500 Erythranthe guttata
MSTRG.27208 Avicennia marina
MSTRG.8834 Avicennia marina
Nitab4.5_0000262g0090 Nicotiana tabacum
Nitab4.5_0000448g0060 Nicotiana tabacum
Nitab4.5_0001267g0110 Nicotiana tabacum
Nitab4.5_0001358g0020 Nicotiana tabacum
Nitab4.5_0001358g0040 Nicotiana tabacum
Nn051s41922 Nelumbo nucifera
Nn1g09078 Nelumbo nucifera
Nn6g33882 Nelumbo nucifera
Oeu031400.2 Olea europaea
Os01g0200000 Oryza sativa ssp. japonica
Os10g0560450 Oryza sativa ssp. japonica
Peaxi162Scf00304g01342 Petunia axillaris
PGR142G1672 Punica granatum
PGSC0003DMG400021594 Solanum tuberosum
Phvul.011G006500 Phaseolus vulgaris
Potri.001G126500 Populus trichocarpa
Potri.003G107000 Populus trichocarpa
Pp3c8_11900 Physcomitrium patens
PRCOL_00004022 Prasinoderma coloniale
Prupe.2G123000 Prunus persica
Psat7g207040 Pisum sativum
PSO063G2499 Papaver somniferum
PSO782G0781 Papaver somniferum
QL02p025668 Quercus lobata
QL04p034713 Quercus lobata
RcHm_v2.0_Chr1g0346321 Rosa chinensis
RcHm_v2.0_Chr4g0385331 Rosa chinensis
Rhsim01G0073400 Rhododendron simsii
Rhsim03G0165100 Rhododendron simsii
Rhsim06G0096100 Rhododendron simsii
Rhsim06G0236800 Rhododendron simsii
Rhsim09G0190400 Rhododendron simsii
Rhsim11G0131000 Rhododendron simsii
Sabra01G0097600 Salix brachista
Sabra03G0073800 Salix brachista
SalBow1G3743 Salvia bowleyana
SalBow2G0135 Salvia bowleyana
Sc10g0008570 Simmondsia chinensis
Sed0016106 Sechium edule
SEGI_13739 Sequoiadendron giganteum
SEGI_20183 Sequoiadendron giganteum
SEGI_32586 Sequoiadendron giganteum
SGA_v2.0_scaffold44G16558 Striga asiatica
SMO134G0003 Selaginella moellendorffii
Solyc06g034160.3 Solanum lycopersicum
Sopen06g010820 Solanum pennellii
Sp2g24700 Schrenkiella parvula
Sp6g35250 Schrenkiella parvula
TAR374G1483 Trochodendron aralioides
THA.LOC104801570 Tarenaya hassleriana
THA.LOC104819415 Tarenaya hassleriana
Thecc.01G388100 Theobroma cacao
Thhalv10004633m.g Eutrema salsugineum
Thhalv10014155m.g Eutrema salsugineum
TPR.G3680 Trifolium pratense
TWI14G1423 Tripterygium wilfordii
unitig_37.g12492 Utricularia gibba
vmacro09915 Vaccinium macrocarpon
VMungo1127G0071 Vigna mungo
Zm00001eb003720 Zea mays
Zm00001eb078430 Zea mays
Zm00001eb216570 Zea mays
Zm00001eb363380 Zea mays
Zm00001eb363440 Zea mays
Zm00001eb391210 Zea mays

User provided reference genes

Program Settings