Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p06580 Brassica napus
A09p65300 Brassica napus
Aa31LG1G5020 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.2788 Anthoceros agrestis
Actinidia29719 Actinidia chinensis
Ah.10g036260 Amaranthus hybridus
AL1G20470 Arabidopsis lyrata
Aqoxy1G01313 Aquilegia oxysepala
Aqoxy2G01450 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.E40VAI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea
AT1G09870 Arabidopsis thaliana
ATR0068G102 Amborella trichopoda
ATR0681G014 Amborella trichopoda
ATR0681G284 Amborella trichopoda
Atru.chr12.96 Acer truncatum
AUR62012296 Chenopodium quinoa
AUR62022935 Chenopodium quinoa
BcaC05g24837 Brassica carinata
BcaC07g41857 Brassica carinata
BolC5t29551H Brassica oleracea
BolC8t52459H Brassica oleracea
BraA06t23872Z Brassica rapa
BraA09t41875Z Brassica rapa
C05p07990 Brassica napus
C08p49240 Brassica napus
CAN.G1268.9 Capsicum annuum
CANSAT56G2949 Cannabis sativa
CARHR009900 Cardamine hirsuta
Carub.0001s0925 Capsella rubella
Ca_15152_v3 Cicer arietinum L.
CBR_g38028 Chara braunii
Cc02_g06060 Coffea canephora
CDE04G1002 Ceratophyllum demersum
CDE06G2086 Ceratophyllum demersum
Cfa026718 Carpinus fangiana
Ciclev10031326m.g Citrus clementina
CiPaw.02G195400 Carya illinoinensis
ClCG07G004500 Citrullus lanatus
Cpa.g.sc19.135 Carica papaya
Cre13.g568600 Chlamydomonas reinhardtii
CsaV3_2G012240 Cucumis sativus L.
CsaV3_2G012250 Cucumis sativus L.
CsaV3_5G010390 Cucumis sativus L.
CsaV3_5G010400 Cucumis sativus L.
CsaV3_5G010430 Cucumis sativus L.
CSS0003201 Camellia sinensis var. sinensis
CSS0003433 Camellia sinensis var. sinensis
CSS0004354 Camellia sinensis var. sinensis
CSS0015783 Camellia sinensis var. sinensis
CSS0042673 Camellia sinensis var. sinensis
CSS0043221 Camellia sinensis var. sinensis
CSS0044757 Camellia sinensis var. sinensis
DCAR_011841 Daucus carota
Dinv10589 Davidia involucrata
Dinv21772 Davidia involucrata
Duzib106G1591 Durio zibethinus
ECA233G0637 Erigeron canadensis
EL10Ac2g04887 Beta vulgaris
Eucgr.G03086 Eucalyptus grandis
FAN01G0819 Fragaria x ananassa
FAN03G0426 Fragaria x ananassa
FAN06G1542 Fragaria x ananassa
FAN10G2809 Fragaria x ananassa
FvH4_7g25060 Fragaria vesca
Glyma.05G080100 Glycine max
Glyma.18G024700 Glycine max
Gohir.A05G331800 Gossypium hirsutum
Gohir.A06G161800 Gossypium hirsutum
Gohir.D04G070400 Gossypium hirsutum
Gohir.D06G167400 Gossypium hirsutum
Gorai.010G195300 Gossypium raimondii
Gorai.012G079000 Gossypium raimondii
GSVIVG01032757001 Vitis vinifera
GSVIVG01032758001 Vitis vinifera
HanXRQChr08g0221971 Helianthus annuus
Haze_17269 Corylus avellana
HPP92_019712 Vanilla planifolia
Hund13891 Selenicereus undatus
Hund15887 Selenicereus undatus
Lalb_Chr08g0231521 Lupinus albus
Lalb_Chr23g0277091 Lupinus albus
Lj1C785G15 Lonicera japonica
Lj6g0018000 Lotus japonicus
Lsat_1_v5_gn_5_175980 Lactuca sativa
Lsat_1_v5_gn_9_123441 Lactuca sativa
Lsat_1_v5_gn_9_60880 Lactuca sativa
Manes.06G044901 Manihot esculenta
Manes.07G134500 Manihot esculenta
Manes.09G077219 Manihot esculenta
Manes.10G009000 Manihot esculenta
Manes.15G188901 Manihot esculenta
Manes.18G042850 Manihot esculenta
Mapoly0029s0098 Marchantia polymorpha
MD01G1157500 Malus domestica
Medtr3g071580 Medicago truncatula
MELO3C001761.2 Cucumis melo
MELO3C018375.2 Cucumis melo
MELO3C018376.2 Cucumis melo
MELO3C031846.2 Cucumis melo
MELO3C033083.2 Cucumis melo
MELO3C034227.2 Cucumis melo
Migut.F00639 Erythranthe guttata
MSTRG.8927 Avicennia marina
Nitab4.5_0000058g0130 Nicotiana tabacum
Nitab4.5_0000789g0120 Nicotiana tabacum
Nitab4.5_0003391g0120 Nicotiana tabacum
Nitab4.5_0005049g0030 Nicotiana tabacum
Nn5g28638 Nelumbo nucifera
Nn7g35848 Nelumbo nucifera
Nn7g36267 Nelumbo nucifera
Oeu056656.1 Olea europaea
Os03g0818100 Oryza sativa ssp. japonica
Peaxi162Scf00284g00528 Petunia axillaris
Peaxi162Scf01149g00319 Petunia axillaris
PGR142G4288 Punica granatum
PGSC0003DMG400027120 Solanum tuberosum
PGSC0003DMG400030038 Solanum tuberosum
Phvul.006G048800 Phaseolus vulgaris
Potri.008G072600 Populus trichocarpa
Potri.010G184600 Populus trichocarpa
Pp3c20_7250 Physcomitrium patens
Pp3c24_6790 Physcomitrium patens
Pp3c8_15050 Physcomitrium patens
Prupe.2G255400 Prunus persica
Prupe.6G130900 Prunus persica
Psat5g130920 Pisum sativum
PSO339G0345 Papaver somniferum
PSO349G0168 Papaver somniferum
PSO801G0566 Papaver somniferum
QL08p063706 Quercus lobata
RcHm_v2.0_Chr1g0370931 Rosa chinensis
Rhsim03G0146600 Rhododendron simsii
Sabra08G0053900 Salix brachista
Sabra10G0141800 Salix brachista
SalBow3G0419 Salvia bowleyana
SalBow3G1521 Salvia bowleyana
SalBow3G3178 Salvia bowleyana
Sc11g0005270 Simmondsia chinensis
Sed0008918 Sechium edule
Sed0009338 Sechium edule
SEGI_18884 Sequoiadendron giganteum
SEGI_27537 Sequoiadendron giganteum
SEGI_29662 Sequoiadendron giganteum
SGA_v2.0_scaffold2G01375 Striga asiatica
SGA_v2.0_scaffold60G20966 Striga asiatica
SGA_v2.0_scaffold85G26692 Striga asiatica
SGA_v2.0_scaffold85G26702 Striga asiatica
SMO271G0017 Selaginella moellendorffii
Solyc05g052480.4 Solanum lycopersicum
Solyc06g050990.3 Solanum lycopersicum
Sopen05g031010 Solanum pennellii
Sopen06g016790 Solanum pennellii
Sp1g08500 Schrenkiella parvula
TAR623G0028 Trochodendron aralioides
TAR626G1532 Trochodendron aralioides
TAR633G0464 Trochodendron aralioides
THA.LOC104810121 Tarenaya hassleriana
THA.LOC104824338 Tarenaya hassleriana
Thecc.10G011300 Theobroma cacao
Thhalv10002208m.g Eutrema salsugineum
Thhalv10007485m.g Eutrema salsugineum
TPR.G10202 Trifolium pratense
TPR.G30156 Trifolium pratense
TPR.G5048 Trifolium pratense
TPR.G5082 Trifolium pratense
TWI09G1304 Tripterygium wilfordii
TWI73G0349 Tripterygium wilfordii
unitig_16.g32857 Utricularia gibba
unitig_8.g4097 Utricularia gibba
unitig_8.g4098 Utricularia gibba
vmacro10004 Vaccinium macrocarpon
vmacro17690 Vaccinium macrocarpon
vmacro17691 Vaccinium macrocarpon
VMungo0331G0218 Vigna mungo
VMungo0540G0037 Vigna mungo
Zm00001eb062330 Zea mays

User provided reference genes

Program Settings