Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p33870 Brassica napus
A06p01500 Brassica napus
A09p58700 Brassica napus
Aa31LG8G17640 Aethionema arabicum
Actinidia12448 Actinidia chinensis
AL3G54020 Arabidopsis lyrata
AT1G52855 Arabidopsis thaliana
AT2G20835 Arabidopsis thaliana
AT3G15534 Arabidopsis thaliana
ATR0191G001 Amborella trichopoda
BcaB04g20919 Brassica carinata
BcaB06g29589 Brassica carinata
BcaB07g33385 Brassica carinata
BcaB08g34942 Brassica carinata
BcaC05g28963 Brassica carinata
BcaC06g36774 Brassica carinata
BcaC07g41193 Brassica carinata
BcaC08g43469 Brassica carinata
BcaC09g48519 Brassica carinata
BolC1t04854H Brassica oleracea
BolC5t33845H Brassica oleracea
BolC6t35932H Brassica oleracea
BolC7t40459H Brassica oleracea
BolC8t51762H Brassica oleracea
BraA01t03904Z Brassica rapa
BraA05t22209Z Brassica rapa
BraA06t23371Z Brassica rapa
BraA09t41256Z Brassica rapa
C01p48910 Brassica napus
C05p51570 Brassica napus
C06p08510 Brassica napus
C08p41990 Brassica napus
CANSAT11G1994 Cannabis sativa
CANSAT64G1248 Cannabis sativa
CARHR043080 Cardamine hirsuta
CARHR090600 Cardamine hirsuta
CARHR111560 Cardamine hirsuta
Carub.0001s4201 Capsella rubella
Carub.0003s1527 Capsella rubella
Carub.0003s3548 Capsella rubella
Ca_01531_v3 Cicer arietinum L.
Cc00_g29860 Coffea canephora
Cc05_g12570 Coffea canephora
Cfa014557 Carpinus fangiana
Cfa020526 Carpinus fangiana
Ciclev10010786m.g Citrus clementina
Ciclev10017406m.g Citrus clementina
CiPaw.03G171100 Carya illinoinensis
CiPaw.04G123400 Carya illinoinensis
CiPaw.11G174800 Carya illinoinensis
ClCG02G017420 Citrullus lanatus
COL.COLO4_09463 Corchorus olitorius
Cpa.g.sc34.113 Carica papaya
CsaV3_3G006060 Cucumis sativus L.
CsaV3_7G004170 Cucumis sativus L.
CSS0011087 Camellia sinensis var. sinensis
CSS0016755 Camellia sinensis var. sinensis
CSS0031855 Camellia sinensis var. sinensis
CSS0032128 Camellia sinensis var. sinensis
CSS0035059 Camellia sinensis var. sinensis
CSS0037327 Camellia sinensis var. sinensis
CSS0044246 Camellia sinensis var. sinensis
DCAR_009979 Daucus carota
DCAR_013078 Daucus carota
Duzib132G0908 Durio zibethinus
Duzib170G0518 Durio zibethinus
Duzib248G0431 Durio zibethinus
Duzib268G1549 Durio zibethinus
EL10Ac4g08086 Beta vulgaris
EL10Ac9g20679 Beta vulgaris
Eucgr.F01087 Eucalyptus grandis
Eucgr.K00940 Eucalyptus grandis
FAN21G1589 Fragaria x ananassa
Glyma.06G249600 Glycine max
Glyma.12G148300 Glycine max
Glyma.12G201800 Glycine max
Glyma.12G220500 Glycine max
Glyma.13G281000 Glycine max
Glyma.13G300400 Glycine max
Gohir.A01G015600 Gossypium hirsutum
Gohir.A01G067400 Gossypium hirsutum
Gohir.A03G159100 Gossypium hirsutum
Gohir.D01G015600 Gossypium hirsutum
Gohir.D01G054600 Gossypium hirsutum
Gohir.D02G182200 Gossypium hirsutum
Gohir.D05G360466 Gossypium hirsutum
Gorai.002G017300 Gossypium raimondii
Gorai.002G074500 Gossypium raimondii
Gorai.005G204700 Gossypium raimondii
Gorai.009G432200 Gossypium raimondii
GSVIVG01014413001 Vitis vinifera
GSVIVG01030567001 Vitis vinifera
HanXRQChr05g0156511 Helianthus annuus
HanXRQChr05g0156551 Helianthus annuus
HanXRQChr08g0235631 Helianthus annuus
HanXRQChr17g0554211 Helianthus annuus
HanXRQChr17g0559351 Helianthus annuus
HanXRQChr17g0559361 Helianthus annuus
Hma1.2p1_0213F.1_g090470 Hydrangea macrophylla
Hma1.2p1_1053F.1_g252410 Hydrangea macrophylla
Hma1.2p1_1143F.1_g261110 Hydrangea macrophylla
Hma1.2p1_1143F.1_g261120 Hydrangea macrophylla
Lalb_Chr19g0134391 Lupinus albus
Lalb_Chr22g0356421 Lupinus albus
Lj3g0025843 Lotus japonicus
Lsat_1_v5_gn_5_7081 Lactuca sativa
Lsat_1_v5_gn_8_131501 Lactuca sativa
Lsat_1_v5_gn_8_131640 Lactuca sativa
Lsat_1_v5_gn_9_85200 Lactuca sativa
Manes.03G115200 Manihot esculenta
Manes.12G087700 Manihot esculenta
Manes.13G150400 Manihot esculenta
Manes.15G084300 Manihot esculenta
Mapoly0067s0090 Marchantia polymorpha
Mapoly0085s0012 Marchantia polymorpha
Mapoly0085s0013 Marchantia polymorpha
MBI18_g32892_MAGBIO Magnolia biondii
MD03G1221400 Malus domestica
MD09G1091900 Malus domestica
MD11G1238900 Malus domestica
MD17G1081800 Malus domestica
Medtr2g090110 Medicago truncatula
MELO3C013523.2 Cucumis melo
MELO3C016544.2 Cucumis melo
Migut.H01032 Erythranthe guttata
Migut.M00867 Erythranthe guttata
Migut.O00868 Erythranthe guttata
Nn1g03940 Nelumbo nucifera
Nn1g06711 Nelumbo nucifera
Oeu058398.1 Olea europaea
Os07g0564200 Oryza sativa ssp. japonica
Peaxi162Scf00007g02826 Petunia axillaris
PGR083G1332 Punica granatum
PGR142G1950 Punica granatum
PGSC0003DMG400018392 Solanum tuberosum
PGSC0003DMG400019299 Solanum tuberosum
PGSC0003DMG400025047 Solanum tuberosum
Phvul.005G085500 Phaseolus vulgaris
Phvul.005G107201 Phaseolus vulgaris
Phvul.011G148500 Phaseolus vulgaris
Potri.001G405400 Populus trichocarpa
Potri.011G124800 Populus trichocarpa
Potri.013G145100 Populus trichocarpa
Potri.019G104100 Populus trichocarpa
Potri.019G104300 Populus trichocarpa
Pp3c22_11210 Physcomitrium patens
Pp3c3_2380 Physcomitrium patens
Prupe.3G233100 Prunus persica
Prupe.4G187900 Prunus persica
Psat2g056680 Pisum sativum
QL08p037564 Quercus lobata
RcHm_v2.0_Chr2g0162101 Rosa chinensis
RcHm_v2.0_Chr5g0035051 Rosa chinensis
Sc03g0009670 Simmondsia chinensis
Sc06g0009210 Simmondsia chinensis
Sed0011440 Sechium edule
Sed0016537 Sechium edule
Sed0025956 Sechium edule
Solyc07g054470.1 Solanum lycopersicum
Solyc07g063470.1 Solanum lycopersicum
Sopen07g028410 Solanum pennellii
Sopen07g031650 Solanum pennellii
Sp1g39430 Schrenkiella parvula
Sp3g34080 Schrenkiella parvula
THA.LOC109116854 Tarenaya hassleriana
THA.LOC109117138 Tarenaya hassleriana
Thecc.07G074300 Theobroma cacao
Thhalv10002196m.g Eutrema salsugineum
Thhalv10012262m.g Eutrema salsugineum
Thhalv10021922m.g Eutrema salsugineum
TPR.G32874 Trifolium pratense
TPR.G35550 Trifolium pratense
TWI18G0639 Tripterygium wilfordii
TWI36G0902 Tripterygium wilfordii
TWI39G0307 Tripterygium wilfordii
TWI75G0545 Tripterygium wilfordii
unitig_0.g2049 Utricularia gibba
unitig_899.g15557 Utricularia gibba
VMungo1127G2113 Vigna mungo
Zm00001eb324400 Zea mays

User provided reference genes

Program Settings