Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p15260 Brassica napus
A07p31880 Brassica napus
Aa31LG6G7310 Aethionema arabicum
Aa31LG6G7320 Aethionema arabicum
Aa31sc562G10 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_369.545 Anthoceros agrestis
Actinidia31024 Actinidia chinensis
Actinidia35079 Actinidia chinensis
Actinidia39818 Actinidia chinensis
Ah.02g127070 Amaranthus hybridus
Ah.03g137840 Amaranthus hybridus
AL2G27580 Arabidopsis lyrata
Aqoxy3G00349 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.5K2M2S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5U1FHR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6C9V7B Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.72UZVS Arachis hypogaea
AT1G68660 Arabidopsis thaliana
ATR0665G367 Amborella trichopoda
Atru.chr11.1333 Acer truncatum
AUR62002909 Chenopodium quinoa
AUR62035268 Chenopodium quinoa
BcaB03g15438 Brassica carinata
BcaB03g15443 Brassica carinata
BcaB05g24403 Brassica carinata
BcaC03g14976 Brassica carinata
BcaC08g45948 Brassica carinata
BolC2t08590H Brassica oleracea
BolC6t38848H Brassica oleracea
BraA02t06588Z Brassica rapa
BraA07t30817Z Brassica rapa
C02p25100 Brassica napus
C06p37450 Brassica napus
C06p41190 Brassica napus
CAN.G438.125 Capsicum annuum
CANSAT64G1970 Cannabis sativa
CARHR061470 Cardamine hirsuta
Carub.0002s1520 Capsella rubella
CBR_g40856 Chara braunii
Cc04_g07410 Coffea canephora
CDE05G0888 Ceratophyllum demersum
CDE11G1133 Ceratophyllum demersum
Cfa019801 Carpinus fangiana
Ciclev10032968m.g Citrus clementina
CiPaw.15G127700 Carya illinoinensis
CiPaw.16G084800 Carya illinoinensis
ClCG04G011240 Citrullus lanatus
ClCG05G022950 Citrullus lanatus
Cpa.g.sc1.209 Carica papaya
Cre17.g696400 Chlamydomonas reinhardtii
CsaV3_1G006510 Cucumis sativus L.
CSS0009272 Camellia sinensis var. sinensis
CSS0028088 Camellia sinensis var. sinensis
CSS0029565 Camellia sinensis var. sinensis
DCAR_011545 Daucus carota
DCAR_023191 Daucus carota
Dinv07363 Davidia involucrata
Dinv21120 Davidia involucrata
Dinv40424 Davidia involucrata
Duzib204G0001 Durio zibethinus
Duzib248G0399 Durio zibethinus
Duzib251G0345 Durio zibethinus
ECA246G4193 Erigeron canadensis
EL10Ac6g14463 Beta vulgaris
Eucgr.K02665 Eucalyptus grandis
FAN04G0089 Fragaria x ananassa
FAN08G1200 Fragaria x ananassa
FAN12G0550 Fragaria x ananassa
FAN13G1296 Fragaria x ananassa
FAN18G2095 Fragaria x ananassa
FAN18G2723 Fragaria x ananassa
FvH4_5g12540 Fragaria vesca
Glyma.01G084700 Glycine max
Glyma.02G098100 Glycine max
Glyma.07G089500 Glycine max
Glyma.09G187300 Glycine max
Gohir.A13G053470 Gossypium hirsutum
Gohir.A13G053526 Gossypium hirsutum
Gohir.D13G070400 Gossypium hirsutum
Gohir.D13G070700 Gossypium hirsutum
Gorai.013G080600 Gossypium raimondii
Gorai.013G080900 Gossypium raimondii
GSVIVG01008253001 Vitis vinifera
GSVIVG01011936001 Vitis vinifera
HanXRQChr06g0171111 Helianthus annuus
Haze_04563 Corylus avellana
Haze_18631 Corylus avellana
HPP92_016288 Vanilla planifolia
HPP92_016307 Vanilla planifolia
HPP92_027194 Vanilla planifolia
Hund25092 Selenicereus undatus
Lalb_Chr10g0099871 Lupinus albus
Lalb_Chr14g0371301 Lupinus albus
Lalb_Chr17g0341961 Lupinus albus
Lj2g0005403 Lotus japonicus
Lj2g0006290 Lotus japonicus
Lj6A762T41 Lonicera japonica
Lj6A764T53 Lonicera japonica
Lj9A429T51 Lonicera japonica
Lsat_1_v5_gn_3_40660 Lactuca sativa
Lsat_1_v5_gn_4_123441 Lactuca sativa
Lsat_1_v5_gn_4_145001 Lactuca sativa
Lsat_1_v5_gn_5_125381 Lactuca sativa
Lsat_1_v5_gn_5_18841 Lactuca sativa
Lsat_1_v5_gn_5_43841 Lactuca sativa
Lsat_1_v5_gn_7_114520 Lactuca sativa
Lsat_1_v5_gn_8_50200 Lactuca sativa
Manes.06G071100 Manihot esculenta
Manes.11G040408 Manihot esculenta
Manes.14G098800 Manihot esculenta
Mapoly0068s0048 Marchantia polymorpha
MBI19_g21095_MAGBIO Magnolia biondii
MD13G1045100 Malus domestica
MD14G1222900 Malus domestica
MD14G1223300 Malus domestica
MD16G1046400 Malus domestica
Medtr5g054770 Medicago truncatula
Medtr6g085050 Medicago truncatula
MELO3C002078.2 Cucumis melo
MELO3C012223.2 Cucumis melo
Migut.D01214 Erythranthe guttata
MSTRG.9269 Avicennia marina
Nitab4.5_0001599g0080 Nicotiana tabacum
Nitab4.5_0010565g0020 Nicotiana tabacum
Nn3g17770 Nelumbo nucifera
Nn4g23759 Nelumbo nucifera
Oeu024319.1 Olea europaea
Os08g0432500 Oryza sativa ssp. japonica
Peaxi162Scf00015g00824 Petunia axillaris
PGR044G0282 Punica granatum
PGSC0003DMG400005627 Solanum tuberosum
Phvul.003G028500 Phaseolus vulgaris
Phvul.004G160300 Phaseolus vulgaris
Potri.008G117800 Populus trichocarpa
Potri.010G128500 Populus trichocarpa
Pp3c10_21560 Physcomitrium patens
Pp3c20_21920 Physcomitrium patens
PRCOL_00003868 Prasinoderma coloniale
Prupe.1G306800 Prunus persica
Prupe.5G218600 Prunus persica
Psat1g039320 Pisum sativum
Psat2g088560 Pisum sativum
PSO063G1115 Papaver somniferum
PSO782G3649 Papaver somniferum
QL10p023733 Quercus lobata
RcHm_v2.0_Chr4g0435651 Rosa chinensis
RcHm_v2.0_Chr7g0184811 Rosa chinensis
Rhsim12G0144000 Rhododendron simsii
Sabra10G0097700 Salix brachista
SalBow1G4777 Salvia bowleyana
Sc04g0006620 Simmondsia chinensis
Sed0007398 Sechium edule
Sed0009794 Sechium edule
Sed0019100 Sechium edule
Sed0022338 Sechium edule
SEGI_01063 Sequoiadendron giganteum
SGA_v2.0_scaffold63G21786 Striga asiatica
SMO356G0199 Selaginella moellendorffii
Solyc03g119700.3 Solanum lycopersicum
Sopen03g038530 Solanum pennellii
Sp5g23760 Schrenkiella parvula
TAR374G1390 Trochodendron aralioides
TAR622G0464 Trochodendron aralioides
THA.LOC104821956 Tarenaya hassleriana
Thecc.02G359500 Theobroma cacao
Thhalv10019264m.g Eutrema salsugineum
TPR.G20310 Trifolium pratense
TPR.G38292 Trifolium pratense
TPR.G9001 Trifolium pratense
TWI31G0653 Tripterygium wilfordii
TWI79G0122 Tripterygium wilfordii
unitig_21.g20429 Utricularia gibba
unitig_744.g24407 Utricularia gibba
vmacro16453 Vaccinium macrocarpon
VMungo0464G1055 Vigna mungo
VMungo0647G0777 Vigna mungo
VMungo0720G3118 Vigna mungo
VMungo1215G1161 Vigna mungo
Zm00001eb041630 Zea mays
Zm00001eb179570 Zea mays

User provided reference genes

Program Settings