Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p17250 Brassica napus
A02p08670 Brassica napus
A03p56350 Brassica napus
A10p14570 Brassica napus
Aa31LG3G13080 Aethionema arabicum
Actinidia29953 Actinidia chinensis
Actinidia38496 Actinidia chinensis
Ah.10g036890 Amaranthus hybridus
Ah.16g102470 Amaranthus hybridus
AL7G27010 Arabidopsis lyrata
AL8G33110 Arabidopsis lyrata
Aqoxy7G02811 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0QJD35 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YRC4PH Arachis hypogaea
AT4G25990 Arabidopsis thaliana
AT5G57180 Arabidopsis thaliana
ATR0626G357 Amborella trichopoda
Atru.chr7.754 Acer truncatum
Atru.chr7.775 Acer truncatum
AUR62012114 Chenopodium quinoa
AUR62040721 Chenopodium quinoa
BcaB05g22326 Brassica carinata
BcaB08g36076 Brassica carinata
BcaC03g14176 Brassica carinata
BcaC04g19992 Brassica carinata
BcaC06g32778 Brassica carinata
BcaC09g50723 Brassica carinata
BcaNung03775 Brassica carinata
BolC1t02080H Brassica oleracea
BolC2t07575H Brassica oleracea
BolC7t45947H Brassica oleracea
BolC9t57752H Brassica oleracea
BraA01t01681Z Brassica rapa
BraA02t05937Z Brassica rapa
BraA03t14705Z Brassica rapa
BraA10t43544Z Brassica rapa
C01p21610 Brassica napus
C02p14510 Brassica napus
C07p54590 Brassica napus
C09p49010 Brassica napus
CAN.G192.5 Capsicum annuum
CARHR233500 Cardamine hirsuta
CARHR270970 Cardamine hirsuta
Carub.0007s1496 Capsella rubella
Carub.0008s1769 Capsella rubella
Ca_02108_v3 Cicer arietinum L.
Ca_27932_v3 Cicer arietinum L.
Cc06_g20840 Coffea canephora
CDE06G2566 Ceratophyllum demersum
Cfa013454 Carpinus fangiana
Ciclev10008308m.g Citrus clementina
CiPaw.07G197300 Carya illinoinensis
CiPaw.08G032400 Carya illinoinensis
ClCG11G011760 Citrullus lanatus
COL.COLO4_07099 Corchorus olitorius
Cpa.g.sc95.8 Carica papaya
CsaV3_2G008720 Cucumis sativus L.
CSS0000053 Camellia sinensis var. sinensis
DCAR_014667 Daucus carota
DCAR_018030 Daucus carota
Dinv25445 Davidia involucrata
Dinv41179 Davidia involucrata
Duzib150G1212 Durio zibethinus
Duzib168G0111 Durio zibethinus
ECA233G1345 Erigeron canadensis
ECA234G4485 Erigeron canadensis
ECA236G3708 Erigeron canadensis
ECA240G2391 Erigeron canadensis
EL10Ac2g04726 Beta vulgaris
Eucgr.C00112 Eucalyptus grandis
Eucgr.C02219 Eucalyptus grandis
FAN02G0923 Fragaria x ananassa
FAN05G4809 Fragaria x ananassa
FAN05G5342 Fragaria x ananassa
FAN07G1538 Fragaria x ananassa
FAN12G0553 Fragaria x ananassa
FAN17G0360 Fragaria x ananassa
FAN22G1182 Fragaria x ananassa
FAN24G1311 Fragaria x ananassa
FvH4_2g01490 Fragaria vesca
FvH4_4g07270 Fragaria vesca
FvH4_6g24780 Fragaria vesca
Glyma.09G059800 Glycine max
Glyma.13G100700 Glycine max
Glyma.15G166500 Glycine max
Glyma.17G059100 Glycine max
Gohir.A05G002200 Gossypium hirsutum
Gohir.D05G002600 Gossypium hirsutum
Gorai.009G002400 Gossypium raimondii
GSVIVG01010855001 Vitis vinifera
HanXRQChr03g0065501 Helianthus annuus
HanXRQChr05g0141071 Helianthus annuus
HanXRQChr09g0245431 Helianthus annuus
HanXRQChr10g0308851 Helianthus annuus
Hma1.2p1_1326F.1_g275850 Hydrangea macrophylla
HPP92_010287 Vanilla planifolia
HPP92_017127 Vanilla planifolia
Hund13780 Selenicereus undatus
Hund16072 Selenicereus undatus
Lalb_Chr07g0180651 Lupinus albus
Lalb_Chr12g0199621 Lupinus albus
Lalb_Chr13g0299991 Lupinus albus
Lj4g0014027 Lotus japonicus
Lj5C612T1 Lonicera japonica
Lj5C615T3 Lonicera japonica
Lsat_1_v5_gn_5_27801 Lactuca sativa
Lsat_1_v5_gn_5_45681 Lactuca sativa
Lsat_1_v5_gn_5_83141 Lactuca sativa
Lsat_1_v5_gn_6_95500 Lactuca sativa
Lsat_1_v5_gn_7_56240 Lactuca sativa
Lsat_1_v5_gn_8_69001 Lactuca sativa
Lsat_1_v5_gn_9_75161 Lactuca sativa
Manes.06G019300 Manihot esculenta
Manes.14G159300 Manihot esculenta
MBI13_g34046_MAGBIO Magnolia biondii
MBI16_g05834_MAGBIO Magnolia biondii
MD13G1239300 Malus domestica
MD16G1248400 Malus domestica
Medtr2g038010 Medicago truncatula
Medtr4g127420 Medicago truncatula
MELO3C003975.2 Cucumis melo
Migut.J00797 Erythranthe guttata
Migut.L01879 Erythranthe guttata
MSTRG.10438 Avicennia marina
MSTRG.26548 Avicennia marina
Nitab4.5_0000491g0080 Nicotiana tabacum
Nitab4.5_0000949g0010 Nicotiana tabacum
Nitab4.5_0000949g0020 Nicotiana tabacum
Nn8g40778 Nelumbo nucifera
Oeu006847.1 Olea europaea
Oeu018819.1 Olea europaea
Oeu019552.1 Olea europaea
Oeu034800.1 Olea europaea
Oeu064847.1 Olea europaea
Os02g0148000 Oryza sativa ssp. japonica
Os06g0699600 Oryza sativa ssp. japonica
Peaxi162Scf01038g00011 Petunia axillaris
PGR001G0001 Punica granatum
PGSC0003DMG400022983 Solanum tuberosum
Phvul.003G141200 Phaseolus vulgaris
Phvul.009G236100 Phaseolus vulgaris
Potri.006G075200 Populus trichocarpa
Potri.018G142100 Populus trichocarpa
Prupe.1G074900 Prunus persica
Psat1g144040 Pisum sativum
Psat4g013600 Pisum sativum
PSO063G0992 Papaver somniferum
PSO170G1122 Papaver somniferum
QL02p046940 Quercus lobata
RcHm_v2.0_Chr4g0399481 Rosa chinensis
Rhsim01G0116800 Rhododendron simsii
Rhsim03G0266200 Rhododendron simsii
Sabra06G0055900 Salix brachista
Sabra18G0116100 Salix brachista
SalBow5G0957 Salvia bowleyana
SalBow5G4432 Salvia bowleyana
Sc10g0001710 Simmondsia chinensis
Sed0004951 Sechium edule
Sed0025245 Sechium edule
Sed0025374 Sechium edule
SGA_v2.0_scaffold112G31580 Striga asiatica
SGA_v2.0_scaffold31G12764 Striga asiatica
SGA_v2.0_scaffold511G52626 Striga asiatica
Solyc07g008540.3 Solanum lycopersicum
Sopen07g004460 Solanum pennellii
Sp6g18910 Schrenkiella parvula
Sp7g24010 Schrenkiella parvula
TAR620G0001 Trochodendron aralioides
Thecc.09G186300 Theobroma cacao
Thhalv10013517m.g Eutrema salsugineum
Thhalv10025322m.g Eutrema salsugineum
TPR.G32975 Trifolium pratense
TWI34G1601 Tripterygium wilfordii
TWI63G0214 Tripterygium wilfordii
unitig_22.g5159 Utricularia gibba
unitig_8.g4051 Utricularia gibba
unitig_8.g4052 Utricularia gibba
vmacro05996 Vaccinium macrocarpon
VMungo1215G0314 Vigna mungo
Zm00001eb208040 Zea mays
Zm00001eb232250 Zea mays

User provided reference genes

Program Settings