Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p40890 Brassica napus
A02p04940 Brassica napus
A03p08890 Brassica napus
Aa31LG11G11120 Aethionema arabicum
Aa31LG5G14820 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.2512 Anthoceros agrestis
Actinidia40003 Actinidia chinensis
Ah.06g191850 Amaranthus hybridus
AL6G29740 Arabidopsis lyrata
Aqoxy2G03639 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.A208ZV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PMT11X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y446PZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y4X76M Arachis hypogaea
AT5G18480 Arabidopsis thaliana
ATR0072G001 Amborella trichopoda
ATR0801G001 Amborella trichopoda
Atru.chr2.1108 Acer truncatum
Atru.chr2.1109 Acer truncatum
AUR62004854 Chenopodium quinoa
AUR62040937 Chenopodium quinoa
BcaB01g04900 Brassica carinata
BcaB05g23331 Brassica carinata
BcaC03g13603 Brassica carinata
BcaC09g47809 Brassica carinata
BcaNung04819 Brassica carinata
BNapus_Darmor_BZH_scaffold_78p00820 Brassica napus
BolC1t05753H Brassica oleracea
BolC2t06899H Brassica oleracea
BolC3t13517H Brassica oleracea
BraA01t04524Z Brassica rapa
BraA02t05453Z Brassica rapa
BraA03t10215Z Brassica rapa
C02p09920 Brassica napus
C03p10370 Brassica napus
CAN.G1465.5 Capsicum annuum
CAN.G1609.2 Capsicum annuum
CAN.G224.3 Capsicum annuum
CANSAT56G0982 Cannabis sativa
CARHR078510 Cardamine hirsuta
CARHR194530 Cardamine hirsuta
Carub.0003s0354 Capsella rubella
Carub.0006s1676 Capsella rubella
Ca_09447_v3 Cicer arietinum L.
Ca_10028_v3 Cicer arietinum L.
CBR_g3073 Chara braunii
Cc02_g08970 Coffea canephora
CDE02G2550 Ceratophyllum demersum
CDE02G3482 Ceratophyllum demersum
CDE08G1101 Ceratophyllum demersum
CDE08G1287 Ceratophyllum demersum
Cfa006383 Carpinus fangiana
Cfa026696 Carpinus fangiana
Ciclev10031149m.g Citrus clementina
CiPaw.07G070900 Carya illinoinensis
ClCG11G010310 Citrullus lanatus
COL.COLO4_15533 Corchorus olitorius
Cpa.g.sc51.6 Carica papaya
Cre10.g422450 Chlamydomonas reinhardtii
CsaV3_2G010010 Cucumis sativus L.
CSS0006152 Camellia sinensis var. sinensis
CSS0024163 Camellia sinensis var. sinensis
CSS0040175 Camellia sinensis var. sinensis
CSS0050159 Camellia sinensis var. sinensis
DCAR_023877 Daucus carota
Dinv08268 Davidia involucrata
Dinv14606 Davidia involucrata
Duzib106G1801 Durio zibethinus
Duzib177G0700 Durio zibethinus
ECA233G2677 Erigeron canadensis
ECA238G1424 Erigeron canadensis
EL10Ac4g09070 Beta vulgaris
Eucgr.H04216 Eucalyptus grandis
FAN02G4114 Fragaria x ananassa
FAN05G4636 Fragaria x ananassa
FAN05G4825 Fragaria x ananassa
FAN09G3890 Fragaria x ananassa
FAN14G2706 Fragaria x ananassa
FAN14G4672 Fragaria x ananassa
FvH4_6g01530 Fragaria vesca
Glyma.03G249500 Glycine max
Glyma.10G164501 Glycine max
Glyma.10G164650 Glycine max
Glyma.19G247000 Glycine max
Glyma.20G226800 Glycine max
Gohir.A11G244900 Gossypium hirsutum
Gohir.A13G161600 Gossypium hirsutum
Gohir.D11G254801 Gossypium hirsutum
Gohir.D11G254901 Gossypium hirsutum
Gohir.D13G172400 Gossypium hirsutum
Gorai.007G273500 Gossypium raimondii
Gorai.013G188300 Gossypium raimondii
GSVIVG01023535001 Vitis vinifera
HanXRQChr01g0012051 Helianthus annuus
HanXRQChr03g0064671 Helianthus annuus
HanXRQChr07g0194371 Helianthus annuus
HanXRQChr08g0225481 Helianthus annuus
Haze_04395 Corylus avellana
HPP92_001759 Vanilla planifolia
HPP92_001760 Vanilla planifolia
HPP92_001761 Vanilla planifolia
Hund22153 Selenicereus undatus
Lalb_Chr04g0262141 Lupinus albus
Lalb_Chr06g0168201 Lupinus albus
Lj1g0028056 Lotus japonicus
Lj2A40T58 Lonicera japonica
Lj5g0014193 Lotus japonicus
Lsat_1_v5_gn_2_107981 Lactuca sativa
Lsat_1_v5_gn_8_2841 Lactuca sativa
Manes.08G141400 Manihot esculenta
Mapoly0009s0041 Marchantia polymorpha
MBI07_g30495_MAGBIO Magnolia biondii
MBI10_g37182_MAGBIO Magnolia biondii
MD04G1232600 Malus domestica
MD12G1250100 Malus domestica
Medtr1g080460 Medicago truncatula
Medtr7g115460 Medicago truncatula
MELO3C008614.2 Cucumis melo
Migut.F00805 Erythranthe guttata
MSTRG.27378 Avicennia marina
Nitab4.5_0001268g0010 Nicotiana tabacum
Nitab4.5_0001372g0080 Nicotiana tabacum
Nitab4.5_0003768g0060 Nicotiana tabacum
Oeu012230.1 Olea europaea
Oeu016029.1 Olea europaea
Os02g0624400 Oryza sativa ssp. japonica
Os04g0517400 Oryza sativa ssp. japonica
Peaxi162Scf00015g03111 Petunia axillaris
Peaxi162Scf00135g00416 Petunia axillaris
PGR004G0836 Punica granatum
PGSC0003DMG400011479 Solanum tuberosum
PGSC0003DMG400023500 Solanum tuberosum
Phvul.006G104100 Phaseolus vulgaris
Phvul.007G116100 Phaseolus vulgaris
Potri.013G049100 Populus trichocarpa
Pp3c1_6500 Physcomitrium patens
Pp3c2_32110 Physcomitrium patens
PRCOL_00003452 Prasinoderma coloniale
PRCOL_00006236 Prasinoderma coloniale
Prupe.6G352300 Prunus persica
Psat0s3161g0200 Pisum sativum
Psat6g144120 Pisum sativum
PSO017G7263 Papaver somniferum
PSO063G7164 Papaver somniferum
QL03p029246 Quercus lobata
RcHm_v2.0_Chr3g0449231 Rosa chinensis
Rhsim05G0175100 Rhododendron simsii
Rhsim09G0137900 Rhododendron simsii
Sabra13G0045400 Salix brachista
SalBow3G4606 Salvia bowleyana
Sc09g0004190 Simmondsia chinensis
Sed0002107 Sechium edule
Sed0018274 Sechium edule
SEGI_36765 Sequoiadendron giganteum
SEGI_37218 Sequoiadendron giganteum
SGA_v2.0_scaffold111G31426 Striga asiatica
SMO364G0002 Selaginella moellendorffii
Solyc04g009920.3 Solanum lycopersicum
Solyc05g055040.3 Solanum lycopersicum
Sopen04g005060 Solanum pennellii
Sopen05g033500 Solanum pennellii
Sp3g03220 Schrenkiella parvula
Sp6g25840 Schrenkiella parvula
TAR365G0429 Trochodendron aralioides
TAR365G0644 Trochodendron aralioides
TAR636G0278 Trochodendron aralioides
THA.LOC104827281 Tarenaya hassleriana
Thecc.05G266900 Theobroma cacao
Thhalv10013196m.g Eutrema salsugineum
Thhalv10020458m.g Eutrema salsugineum
Thhalv10021780m.g Eutrema salsugineum
TPR.G26623 Trifolium pratense
TPR.G6978 Trifolium pratense
TWI32G1243 Tripterygium wilfordii
TWI60G0892 Tripterygium wilfordii
unitig_32.g11828 Utricularia gibba
unitig_748.g8681 Utricularia gibba
vmacro10357 Vaccinium macrocarpon
vmacro20000 Vaccinium macrocarpon
VMungo0540G0271 Vigna mungo
VMungo0720G0320 Vigna mungo
Zm00001eb426690 Zea mays

User provided reference genes

Program Settings