Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A08p35840 Brassica napus
A10p05480 Brassica napus
Aa31LG5G6380 Aethionema arabicum
Actinidia23183 Actinidia chinensis
Actinidia23184 Actinidia chinensis
Actinidia32598 Actinidia chinensis
AL1G16970 Arabidopsis lyrata
AL1G16990 Arabidopsis lyrata
AL1G17100 Arabidopsis lyrata
AL1G17110 Arabidopsis lyrata
Aqoxy2G00749 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.WCY7KD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea
AT1G06950 Arabidopsis thaliana
ATR0584G141 Amborella trichopoda
Atru.chr1.2566 Acer truncatum
Atru.chr1.2574 Acer truncatum
AUR62009720 Chenopodium quinoa
AUR62036227 Chenopodium quinoa
BcaB02g06769 Brassica carinata
BcaB03g13435 Brassica carinata
BcaC05g24660 Brassica carinata
BcaC09g50643 Brassica carinata
BcaC09g51691 Brassica carinata
BolC1t01884H Brassica oleracea
BolC1t02191H Brassica oleracea
BolC5t29277H Brassica oleracea
BolC8t47069H Brassica oleracea
BraA08t35491Z Brassica rapa
BraA10t42811Z Brassica rapa
C01p10430 Brassica napus
C01p22580 Brassica napus
C05p05050 Brassica napus
C08p02740 Brassica napus
CAN.G1702.5 Capsicum annuum
CANSAT54G0450 Cannabis sativa
CANSAT80G1859 Cannabis sativa
CARHR006620 Cardamine hirsuta
Carub.0001s0624 Capsella rubella
Ca_05689_v3 Cicer arietinum L.
Ca_13017_v3 Cicer arietinum L.
CBR_g29785 Chara braunii
Cc01_g14920 Coffea canephora
Cc01_g14930 Coffea canephora
Cc01_g14940 Coffea canephora
Cc01_g15070 Coffea canephora
CDE04G3388 Ceratophyllum demersum
CDE07G0033 Ceratophyllum demersum
CDE07G0188 Ceratophyllum demersum
CDE07G0464 Ceratophyllum demersum
CDE07G0490 Ceratophyllum demersum
Cfa011800 Carpinus fangiana
Ciclev10000209m.g Citrus clementina
CiPaw.13G066600 Carya illinoinensis
ClCG03G000210 Citrullus lanatus
COL.COLO4_04363 Corchorus olitorius
COL.COLO4_07614 Corchorus olitorius
COL.COLO4_11183 Corchorus olitorius
Cpa.g.sc173.16 Carica papaya
Cre10.g452450 Chlamydomonas reinhardtii
CsaV3_1G036690 Cucumis sativus L.
CSS0002946 Camellia sinensis var. sinensis
CSS0035288 Camellia sinensis var. sinensis
DCAR_028861 Daucus carota
Dinv12255 Davidia involucrata
Dinv12256 Davidia involucrata
Dinv28708 Davidia involucrata
Duzib168G2305 Durio zibethinus
ECA247G0395 Erigeron canadensis
EL10Ac7g15867 Beta vulgaris
Eucgr.B04013 Eucalyptus grandis
Eucgr.I01027 Eucalyptus grandis
FAN11G2663 Fragaria x ananassa
FAN16G2780 Fragaria x ananassa
FAN21G1607 Fragaria x ananassa
FAN25G2625 Fragaria x ananassa
FvH4_3g40080 Fragaria vesca
Glyma.02G233700 Glycine max
Glyma.11G162400 Glycine max
Glyma.14G201500 Glycine max
Glyma.18G055700 Glycine max
Gohir.A03G024300 Gossypium hirsutum
Gohir.D03G144200 Gossypium hirsutum
Gorai.003G151500 Gossypium raimondii
GSVIVG01024601001 Vitis vinifera
HanXRQChr08g0228441 Helianthus annuus
Haze_24439 Corylus avellana
Hma1.2p1_0613F.1_g189200 Hydrangea macrophylla
Hma1.2p1_1421F.1_g282490 Hydrangea macrophylla
Hma1.2p1_1586F.1_g292110 Hydrangea macrophylla
Hma1.2p1_1586F.1_g292120 Hydrangea macrophylla
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla
HPP92_014541 Vanilla planifolia
HPP92_014542 Vanilla planifolia
Hund05047 Selenicereus undatus
Lalb_Chr10g0103681 Lupinus albus
Lj1A123G49 Lonicera japonica
Lj1A124T30 Lonicera japonica
Lj6A615T90 Lonicera japonica
Lj6A615T91 Lonicera japonica
LjContig00141g0011314 Lotus japonicus
Lsat_1_v5_gn_9_14381 Lactuca sativa
Manes.18G140750 Manihot esculenta
Mapoly0002s0142 Marchantia polymorpha
MBI07_g35968_MAGBIO Magnolia biondii
MBI15_g33038_MAGBIO Magnolia biondii
MCO16G620 Micromonas commoda
MD03G1058800 Malus domestica
MD11G1060900 Malus domestica
Medtr3g466170 Medicago truncatula
Medtr5g074690 Medicago truncatula
MELO3C020500.2 Cucumis melo
Migut.D00836 Erythranthe guttata
MSTRG.17901 Avicennia marina
MSTRG.18544 Avicennia marina
Nitab4.5_0000486g0130 Nicotiana tabacum
Nitab4.5_0004637g0060 Nicotiana tabacum
Nitab4.5_0004906g0050 Nicotiana tabacum
Nn1g08532 Nelumbo nucifera
Nn5g27878 Nelumbo nucifera
Oeu044915.1 Olea europaea
Oeu050039.1 Olea europaea
Oeu050040.1 Olea europaea
Os10g0492000 Oryza sativa ssp. japonica
Os10g0492101 Oryza sativa ssp. japonica
Os10g0492300 Oryza sativa ssp. japonica
Os12g0117900 Oryza sativa ssp. japonica
Peaxi162Scf00095g00168 Petunia axillaris
PGR004G1069 Punica granatum
Phvul.008G250000 Phaseolus vulgaris
Potri.013G154300 Populus trichocarpa
Potri.019G127000 Populus trichocarpa
Pp3c14_10270 Physcomitrium patens
Pp3c17_6540 Physcomitrium patens
PRCOL_00000154 Prasinoderma coloniale
Prupe.6G045000 Prunus persica
Psat2g052760 Pisum sativum
Psat5g150840 Pisum sativum
PSO339G0950 Papaver somniferum
PSO339G1799 Papaver somniferum
PSO339G3141 Papaver somniferum
PSO384G0852 Papaver somniferum
QL01p018072 Quercus lobata
QL05p055919 Quercus lobata
QL05p056751 Quercus lobata
RcHm_v2.0_Chr5g0072271 Rosa chinensis
Rhsim13G0062300 Rhododendron simsii
Sabra13G0124100 Salix brachista
Sabra19G0124600 Salix brachista
Sabra19G0124700 Salix brachista
Sabra19G0125000 Salix brachista
Sabra19G0125100 Salix brachista
Sabra19G0125200 Salix brachista
Sabra19G0125300 Salix brachista
Sabra19G0130000 Salix brachista
Sc17g0002560 Simmondsia chinensis
Sed0013919 Sechium edule
SEGI_21560 Sequoiadendron giganteum
SEGI_22189 Sequoiadendron giganteum
SEGI_40714 Sequoiadendron giganteum
SGA_v2.0_scaffold20G09298 Striga asiatica
SHI19239 Sapria himalayana
SHI19242 Sapria himalayana
SHI19243 Sapria himalayana
SMO347G0592 Selaginella moellendorffii
Solyc09g031780.3 Solanum lycopersicum
Sopen09g014770 Solanum pennellii
Sp1g05660 Schrenkiella parvula
TAR369G0201 Trochodendron aralioides
TAR623G1445 Trochodendron aralioides
Thecc.09G360800 Theobroma cacao
Thhalv10006671m.g Eutrema salsugineum
TPR.G17744 Trifolium pratense
TPR.G24942 Trifolium pratense
TWI75G1891 Tripterygium wilfordii
TWI79G0650 Tripterygium wilfordii
unitig_747.g21451 Utricularia gibba
vmacro02901 Vaccinium macrocarpon
VMungo0647G2088 Vigna mungo
VMungo1215G2313 Vigna mungo
VMungo1215G2515 Vigna mungo
Zm00001eb044910 Zea mays

User provided reference genes

Program Settings