Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A09p24510 Brassica napus
Aa31LG2G7040 Aethionema arabicum
Actinidia13966 Actinidia chinensis
Actinidia16162 Actinidia chinensis
Actinidia17586 Actinidia chinensis
Ah.02g126850 Amaranthus hybridus
arahy.Tifrunner.gnm1.ann1.1H4V42 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MG99FN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NP9FW8 Arachis hypogaea
AT2G03630 Arabidopsis thaliana
ATR0177G031 Amborella trichopoda
ATR1101G066 Amborella trichopoda
ATR1101G105 Amborella trichopoda
ATR1128G011 Amborella trichopoda
ATR1128G053 Amborella trichopoda
ATR1128G085 Amborella trichopoda
Atru.chr11.1622 Acer truncatum
Atru.chr8.428 Acer truncatum
BcaB07g30663 Brassica carinata
BraA09t38045Z Brassica rapa
CAN.G497.103 Capsicum annuum
CAN.G497.106 Capsicum annuum
CAN.G83.4 Capsicum annuum
CANSAT64G1049 Cannabis sativa
CANSAT64G2286 Cannabis sativa
Carub.0005s0277 Capsella rubella
Ca_04304_v3 Cicer arietinum L.
Cc07_g04250 Coffea canephora
CDE02G2765 Ceratophyllum demersum
CDE04G2454 Ceratophyllum demersum
CDE05G3272 Ceratophyllum demersum
CDE07G0587 Ceratophyllum demersum
Cfa007670 Carpinus fangiana
Ciclev10012704m.g Citrus clementina
Ciclev10033684m.g Citrus clementina
CiPaw.03G088400 Carya illinoinensis
CiPaw.04G055500 Carya illinoinensis
CiPaw.05G124800 Carya illinoinensis
ClCG05G023700 Citrullus lanatus
ClCG11G004790 Citrullus lanatus
COL.COLO4_04937 Corchorus olitorius
COL.COLO4_27878 Corchorus olitorius
Cpa.g.sc1.128 Carica papaya
Cpa.g.sc14.178 Carica papaya
CsaV3_5G033330 Cucumis sativus L.
CsaV3_5G033340 Cucumis sativus L.
CsaV3_5G038510 Cucumis sativus L.
CSS0001662 Camellia sinensis var. sinensis
CSS0023913 Camellia sinensis var. sinensis
DCAR_024124 Daucus carota
DCAR_025433 Daucus carota
DCAR_030042 Daucus carota
Dinv16736 Davidia involucrata
Dinv33830 Davidia involucrata
Dinv34065 Davidia involucrata
Duzib187G0666 Durio zibethinus
Duzib251G0768 Durio zibethinus
Duzib264G1237 Durio zibethinus
Duzib268G1106 Durio zibethinus
ECA238G2630 Erigeron canadensis
Eucgr.I02036 Eucalyptus grandis
FAN17G0759 Fragaria x ananassa
FAN22G0001 Fragaria x ananassa
FvH4_4g29990 Fragaria vesca
FvH4_6g46831 Fragaria vesca
Glyma.13G056300 Glycine max
Glyma.19G030300 Glycine max
Gohir.A05G306700 Gossypium hirsutum
Gohir.A05G372300 Gossypium hirsutum
Gohir.A11G072600 Gossypium hirsutum
Gohir.A13G082800 Gossypium hirsutum
Gohir.D04G043300 Gossypium hirsutum
Gohir.D05G306900 Gossypium hirsutum
Gohir.D11G076900 Gossypium hirsutum
Gohir.D13G082500 Gossypium hirsutum
Gorai.007G082600 Gossypium raimondii
Gorai.009G326900 Gossypium raimondii
Gorai.012G048600 Gossypium raimondii
Gorai.013G094300 Gossypium raimondii
GSVIVG01012223001 Vitis vinifera
HanXRQChr07g0199751 Helianthus annuus
Haze_11903 Corylus avellana
Haze_14428 Corylus avellana
Hma1.2p1_0566F.1_g179820 Hydrangea macrophylla
HPP92_003197 Vanilla planifolia
HPP92_007004 Vanilla planifolia
HPP92_011441 Vanilla planifolia
Lalb_Chr02g0158901 Lupinus albus
Lalb_Chr06g0174951 Lupinus albus
Lalb_Chr21g0318351 Lupinus albus
Lj2g0021607 Lotus japonicus
Lju41C3T13 Lonicera japonica
Lsat_1_v5_gn_2_90140 Lactuca sativa
Lsat_1_v5_gn_3_97381 Lactuca sativa
Manes.01G027300 Manihot esculenta
Manes.01G096200 Manihot esculenta
Manes.02G055200 Manihot esculenta
Manes.05G110301 Manihot esculenta
MD09G1067000 Malus domestica
MD13G1062500 Malus domestica
MD16G1060800 Malus domestica
MD17G1059900 Malus domestica
Medtr5g045480 Medicago truncatula
Medtr6g015240 Medicago truncatula
MELO3C012154.2 Cucumis melo
MELO3C022033.2 Cucumis melo
Migut.H00622 Erythranthe guttata
Migut.K01274 Erythranthe guttata
Migut.L01187 Erythranthe guttata
MSTRG.15451 Avicennia marina
MSTRG.23883 Avicennia marina
Nitab4.5_0001637g0040 Nicotiana tabacum
Nitab4.5_0002960g0050 Nicotiana tabacum
Nitab4.5_0003841g0060 Nicotiana tabacum
Nitab4.5_0007320g0010 Nicotiana tabacum
Nn3g17457 Nelumbo nucifera
Oeu007068.1 Olea europaea
Os07g0298100 Oryza sativa ssp. japonica
Peaxi162Scf00166g00047 Petunia axillaris
Peaxi162Scf00451g00113 Petunia axillaris
PGR004G1779 Punica granatum
PGR119G1736 Punica granatum
PGSC0003DMG400001359 Solanum tuberosum
PGSC0003DMG400012377 Solanum tuberosum
Phvul.004G037400 Phaseolus vulgaris
Potri.004G120400 Populus trichocarpa
Potri.008G096300 Populus trichocarpa
Potri.010G158000 Populus trichocarpa
Potri.017G094300 Populus trichocarpa
Prupe.1G287500 Prunus persica
Prupe.3G254700 Prunus persica
Psat1g068800 Pisum sativum
QL03p074082 Quercus lobata
RcHm_v2.0_Chr4g0438271 Rosa chinensis
Rhsim08G0075000 Rhododendron simsii
Rhsim09G0127000 Rhododendron simsii
Rhsim10G0049700 Rhododendron simsii
Sabra04G0069600 Salix brachista
Sabra08G0072600 Salix brachista
Sabra10G0120000 Salix brachista
Sabra17G0083100 Salix brachista
SalBow1G2532 Salvia bowleyana
SalBow1G3309 Salvia bowleyana
SalBow1G5677 Salvia bowleyana
SalBow8G1714 Salvia bowleyana
Sc04g0007550 Simmondsia chinensis
Sc11g0002500 Simmondsia chinensis
Sc14g0007980 Simmondsia chinensis
Sed0005051 Sechium edule
Sed0011679 Sechium edule
Sed0025283 Sechium edule
SGA_v2.0_scaffold148G36413 Striga asiatica
SGA_v2.0_scaffold154G37113 Striga asiatica
SGA_v2.0_scaffold36G14463 Striga asiatica
SGA_v2.0_scaffold52G19142 Striga asiatica
SHI06685 Sapria himalayana
SHI15724 Sapria himalayana
Solyc02g088840.3 Solanum lycopersicum
Solyc03g059470.1 Solanum lycopersicum
Sopen02g033550 Solanum pennellii
Sp2g14470 Schrenkiella parvula
TAR374G1256 Trochodendron aralioides
TAR622G0628 Trochodendron aralioides
TAR629G2847 Trochodendron aralioides
THA.LOC104801821 Tarenaya hassleriana
THA.LOC104805198 Tarenaya hassleriana
Thecc.02G330000 Theobroma cacao
Thecc.04G095900 Theobroma cacao
Thhalv10005553m.g Eutrema salsugineum
TPR.G10000 Trifolium pratense
TPR.G24475 Trifolium pratense
TWI31G1463 Tripterygium wilfordii
TWI60G0888 Tripterygium wilfordii
TWI75G0087 Tripterygium wilfordii
TWI79G0236 Tripterygium wilfordii
unitig_32.g11770 Utricularia gibba
unitig_8.g3183 Utricularia gibba
unitig_899.g15099 Utricularia gibba
vmacro10428 Vaccinium macrocarpon
vmacro18147 Vaccinium macrocarpon
VMungo0464G0106 Vigna mungo
Zm00001eb305470 Zea mays

User provided reference genes

Program Settings