Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p60680 Brassica napus
A08p18640 Brassica napus
Aa31LG2G18950 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis
Actinidia03891 Actinidia chinensis
Actinidia04001 Actinidia chinensis
Actinidia06046 Actinidia chinensis
Actinidia31110 Actinidia chinensis
Ah.04g152350 Amaranthus hybridus
AL1G32760 Arabidopsis lyrata
AL7G20660 Arabidopsis lyrata
Aqoxy1G00670 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea
AT4G31400 Arabidopsis thaliana
ATR0772G001 Amborella trichopoda
ATR0772G109 Amborella trichopoda
ATR0772G111 Amborella trichopoda
ATR1127G225 Amborella trichopoda
Atru.chr8.1371 Acer truncatum
AUR62030753 Chenopodium quinoa
AUR62036398 Chenopodium quinoa
AUR62040627 Chenopodium quinoa
BcaB03g12691 Brassica carinata
BcaC01g01091 Brassica carinata
BcaNung01523 Brassica carinata
BcaNung04576 Brassica carinata
BolC3t21111H Brassica oleracea
BolC7t46313H Brassica oleracea
BraA03t15109Z Brassica rapa
BraA08t33827Z Brassica rapa
C03p88000 Brassica napus
C07p58580 Brassica napus
CAN.G170.93 Capsicum annuum
CANSAT01G0129 Cannabis sativa
CARHR239280 Cardamine hirsuta
Carub.0007s0916 Capsella rubella
Ca_03587_v3 Cicer arietinum L.
Ca_17838_v3 Cicer arietinum L.
CBR_g51231 Chara braunii
CBR_g53498 Chara braunii
CBR_g53714 Chara braunii
Cc02_g09440 Coffea canephora
Cc06_g06510 Coffea canephora
CDE06G0061 Ceratophyllum demersum
CDE08G1154 Ceratophyllum demersum
Cfa017313 Carpinus fangiana
Cfa022807 Carpinus fangiana
Ciclev10012131m.g Citrus clementina
CiPaw.09G020700 Carya illinoinensis
CiPaw.10G017000 Carya illinoinensis
ClCG10G018370 Citrullus lanatus
Cpa.g.sc10.172 Carica papaya
Cre12.g542400 Chlamydomonas reinhardtii
CsaV3_3G037920 Cucumis sativus L.
CSS0029856 Camellia sinensis var. sinensis
CSS0048701 Camellia sinensis var. sinensis
DCAR_009179 Daucus carota
Dinv12337 Davidia involucrata
Dinv31756 Davidia involucrata
Duzib093G1220 Durio zibethinus
ECA248G2654 Erigeron canadensis
EL10Ac5g12476 Beta vulgaris
EL10Ac6g14086 Beta vulgaris
Eucgr.K02618 Eucalyptus grandis
FAN02G2206 Fragaria x ananassa
FAN05G1631 Fragaria x ananassa
FAN05G5379 Fragaria x ananassa
FAN09G0267 Fragaria x ananassa
FAN14G3039 Fragaria x ananassa
FvH4_6g20270 Fragaria vesca
Glyma.19G199100 Glycine max
Glyma.19G200100 Glycine max
Gohir.A09G134500 Gossypium hirsutum
Gohir.D04G105401 Gossypium hirsutum
Gohir.D09G131000 Gossypium hirsutum
Gorai.005G179000 Gossypium raimondii
Gorai.006G149700 Gossypium raimondii
GSVIVG01029568001 Vitis vinifera
GSVIVG01037869001 Vitis vinifera
HanXRQChr01g0025751 Helianthus annuus
HanXRQChr03g0072391 Helianthus annuus
HanXRQChr15g0472861 Helianthus annuus
HanXRQChr16g0532941 Helianthus annuus
Haze_19697 Corylus avellana
Haze_20190 Corylus avellana
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla
HPP92_023079 Vanilla planifolia
Hund10883 Selenicereus undatus
Lalb_Chr18g0056351 Lupinus albus
Lj1A1051T45 Lonicera japonica
Lj1g0015362 Lotus japonicus
Lj2A35G43 Lonicera japonica
Lsat_1_v5_gn_1_27721 Lactuca sativa
Lsat_1_v5_gn_1_58161 Lactuca sativa
Lsat_1_v5_gn_6_113040 Lactuca sativa
Manes.08G033100 Manihot esculenta
Manes.11G103601 Manihot esculenta
Mapoly0033s0057 Marchantia polymorpha
MBI04_g43653_MAGBIO Magnolia biondii
MBI04_g47396_MAGBIO Magnolia biondii
MCO12G060 Micromonas commoda
MD10G1054000 Malus domestica
MD12G1039800 Malus domestica
MD14G1038400 Malus domestica
Medtr0036s0040 Medicago truncatula
Medtr2g102470 Medicago truncatula
MELO3C009536.2 Cucumis melo
Migut.J00706 Erythranthe guttata
MSTRG.5897 Avicennia marina
Nitab4.5_0000020g0070 Nicotiana tabacum
Nitab4.5_0001122g0140 Nicotiana tabacum
Nitab4.5_0001552g0060 Nicotiana tabacum
Nitab4.5_0002858g0040 Nicotiana tabacum
Nitab4.5_0008187g0010 Nicotiana tabacum
Nn2g14295 Nelumbo nucifera
Oeu034092.2 Olea europaea
Oeu052621.2 Olea europaea
Os04g0498900 Oryza sativa ssp. japonica
Peaxi162Scf00586g00012 Petunia axillaris
PGR142G3230 Punica granatum
PGR142G3605 Punica granatum
PGSC0003DMG400021351 Solanum tuberosum
Phvul.001G195300 Phaseolus vulgaris
Potri.016G070800 Populus trichocarpa
Pp3c11_11100 Physcomitrium patens
PRCOL_00001992 Prasinoderma coloniale
Prupe.7G095100 Prunus persica
Psat5g299360 Pisum sativum
PSO541G6247 Papaver somniferum
PSO675G6385 Papaver somniferum
PSO675G8110 Papaver somniferum
QL04p046781 Quercus lobata
QL04p047257 Quercus lobata
QL07p036815 Quercus lobata
RcHm_v2.0_Chr1g0331051 Rosa chinensis
RcHm_v2.0_Chr3g0475861 Rosa chinensis
Rhsim03G0064900 Rhododendron simsii
Rhsim09G0141200 Rhododendron simsii
RhsimUnG0138100 Rhododendron simsii
RhsimUnG0138400 Rhododendron simsii
Sabra16G0070900 Salix brachista
Sabra16G0073100 Salix brachista
SalBow8G0162 Salvia bowleyana
Sc07g0006420 Simmondsia chinensis
Sed0000357 Sechium edule
Sed0026509 Sechium edule
SEGI_09697 Sequoiadendron giganteum
SGA_v2.0_scaffold13G06629 Striga asiatica
SGA_v2.0_scaffold31G12848 Striga asiatica
SGA_v2.0_scaffold522G52710 Striga asiatica
SMO343G0088 Selaginella moellendorffii
SMO367G1200 Selaginella moellendorffii
Solyc01g007160.4 Solanum lycopersicum
Solyc01g110330.3 Solanum lycopersicum
Sopen01g003140 Solanum pennellii
Sopen01g052480 Solanum pennellii
Sp7g29260 Schrenkiella parvula
TAR623G0955 Trochodendron aralioides
TAR629G3109 Trochodendron aralioides
TAR633G0070 Trochodendron aralioides
TAR636G0720 Trochodendron aralioides
TAR636G1975 Trochodendron aralioides
THA.LOC104809956 Tarenaya hassleriana
THA.LOC104816619 Tarenaya hassleriana
Thecc.05G103800 Theobroma cacao
Thhalv10027115m.g Eutrema salsugineum
TPR.G165 Trifolium pratense
TPR.G33838 Trifolium pratense
TPR.G37223 Trifolium pratense
TPR.G742 Trifolium pratense
TPR.G7497 Trifolium pratense
TWI53G0607 Tripterygium wilfordii
TWI74G1316 Tripterygium wilfordii
unitig_26.g10109 Utricularia gibba
vmacro07475 Vaccinium macrocarpon
vmacro10320 Vaccinium macrocarpon
VMungo0464G1804 Vigna mungo
VMungo1383G2961 Vigna mungo
Zm00001eb078390 Zea mays
Zm00001eb078400 Zea mays
Zm00001eb078410 Zea mays

User provided reference genes

Program Settings