Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p25300 Brassica napus
A08p09370 Brassica napus
A09p34110 Brassica napus
Aa31LG2G13940 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.3106 Anthoceros agrestis
Actinidia01337 Actinidia chinensis
Actinidia14766 Actinidia chinensis
Actinidia24585 Actinidia chinensis
Actinidia27273 Actinidia chinensis
AL1G46130 Arabidopsis lyrata
Aqoxy3G02118 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.6KVT94 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8L38IN Arachis hypogaea
AT1G32060 Arabidopsis thaliana
ATR0829G012 Amborella trichopoda
Atru.chr6.1571 Acer truncatum
Atru.chr6.1572 Acer truncatum
AUR62007378 Chenopodium quinoa
AUR62018610 Chenopodium quinoa
BcaB03g13770 Brassica carinata
BcaB04g18001 Brassica carinata
BcaB07g32867 Brassica carinata
BcaC05g27231 Brassica carinata
BcaC05g27932 Brassica carinata
BcaC07g37635 Brassica carinata
BolC5t31869H Brassica oleracea
BolC5t32673H Brassica oleracea
BolC8t48008H Brassica oleracea
BraA05t21415Z Brassica rapa
BraA08t32935Z Brassica rapa
BraA09t38959Z Brassica rapa
C05p31460 Brassica napus
C05p39370 Brassica napus
CAN.G773.20 Capsicum annuum
CANSAT21G0558 Cannabis sativa
CANSAT21G0653 Cannabis sativa
CARHR031410 Cardamine hirsuta
Carub.0001s3038 Capsella rubella
Ca_25153_v3 Cicer arietinum L.
CBR_g39737 Chara braunii
Cc08_g03960 Coffea canephora
CDE02G1660 Ceratophyllum demersum
CDE02G2545 Ceratophyllum demersum
CDE03G0017 Ceratophyllum demersum
CDE06G1725 Ceratophyllum demersum
CDE11G0445 Ceratophyllum demersum
CDE11G0697 Ceratophyllum demersum
Cfa012551 Carpinus fangiana
Ciclev10001344m.g Citrus clementina
CiPaw.11G100900 Carya illinoinensis
CiPaw.12G070000 Carya illinoinensis
ClCG07G002220 Citrullus lanatus
ClCG10G001180 Citrullus lanatus
COL.COLO4_16898 Corchorus olitorius
Cpa.g.sc147.1 Carica papaya
Cre12.g554800 Chlamydomonas reinhardtii
CsaV3_3G001220 Cucumis sativus L.
CsaV3_3G030440 Cucumis sativus L.
CSS0008149 Camellia sinensis var. sinensis
CSS0016333 Camellia sinensis var. sinensis
CSS0041235 Camellia sinensis var. sinensis
DCAR_004263 Daucus carota
DCAR_008201 Daucus carota
Dinv06903 Davidia involucrata
Dinv29027 Davidia involucrata
Dinv29028 Davidia involucrata
Duzib068G0068 Durio zibethinus
Duzib084G1234 Durio zibethinus
Duzib205G1159 Durio zibethinus
ECA233G1784 Erigeron canadensis
ECA240G0263 Erigeron canadensis
EL10Ac5g11979 Beta vulgaris
Eucgr.D02625 Eucalyptus grandis
Eucgr.E01261 Eucalyptus grandis
FAN04G1074 Fragaria x ananassa
FAN08G1257 Fragaria x ananassa
FAN13G3207 Fragaria x ananassa
FAN18G3344 Fragaria x ananassa
FAN18G4499 Fragaria x ananassa
FvH4_5g23520 Fragaria vesca
Glyma.01G010200 Glycine max
Glyma.09G210900 Glycine max
Gohir.A03G000019 Gossypium hirsutum
Gohir.A12G204600 Gossypium hirsutum
Gohir.D03G177400 Gossypium hirsutum
Gohir.D12G207000 Gossypium hirsutum
Gorai.003G186600 Gossypium raimondii
Gorai.008G222400 Gossypium raimondii
GSVIVG01011555001 Vitis vinifera
GSVIVG01024410001 Vitis vinifera
HanXRQChr02g0050031 Helianthus annuus
HanXRQChr03g0082041 Helianthus annuus
HanXRQChr13g0404801 Helianthus annuus
Haze_08106 Corylus avellana
Hma1.2p1_0803F.1_g220690 Hydrangea macrophylla
Hma1.2p1_1137F.1_g260650 Hydrangea macrophylla
HPP92_020819 Vanilla planifolia
Hund14389 Selenicereus undatus
Lalb_Chr05g0215611 Lupinus albus
Lalb_Chr16g0380901 Lupinus albus
Lj2g0001675 Lotus japonicus
Lj8A318T48 Lonicera japonica
Lsat_1_v5_gn_6_17740 Lactuca sativa
Lsat_1_v5_gn_6_73360 Lactuca sativa
Manes.15G185100 Manihot esculenta
Manes.17G006674 Manihot esculenta
Mapoly0012s0175 Marchantia polymorpha
MBI04_g36021_MAGBIO Magnolia biondii
MBI19_g21088_MAGBIO Magnolia biondii
MCO14G400 Micromonas commoda
MD00G1068500 Malus domestica
MD06G1023500 Malus domestica
MD11G1196800 Malus domestica
MD13G1246600 Malus domestica
Medtr5g027530 Medicago truncatula
MELO3C013811.2 Cucumis melo
MELO3C026722.2 Cucumis melo
Migut.E01330 Erythranthe guttata
MSTRG.11897 Avicennia marina
MSTRG.25705 Avicennia marina
Nitab4.5_0000543g0160 Nicotiana tabacum
Nitab4.5_0001770g0170 Nicotiana tabacum
Nitab4.5_0003152g0030 Nicotiana tabacum
Nitab4.5_0006395g0030 Nicotiana tabacum
Nn1g01916 Nelumbo nucifera
Nn3g19345 Nelumbo nucifera
Oeu002044.1 Olea europaea
Oeu061069.1 Olea europaea
Os02g0698000 Oryza sativa ssp. japonica
Os04g0596900 Oryza sativa ssp. japonica
Peaxi162Scf00879g00019 Petunia axillaris
PGR031G2638 Punica granatum
PGR042G3493 Punica granatum
PGSC0003DMG400009317 Solanum tuberosum
Phvul.002G133100 Phaseolus vulgaris
Potri.001G134000 Populus trichocarpa
Potri.003G099400 Populus trichocarpa
Pp3c18_7120 Physcomitrium patens
Pp3c19_14070 Physcomitrium patens
Pp3c21_14450 Physcomitrium patens
PRCOL_00002010 Prasinoderma coloniale
Prupe.5G024600 Prunus persica
Psat2g140680 Pisum sativum
PSO063G0145 Papaver somniferum
PSO782G4140 Papaver somniferum
QL12p000321 Quercus lobata
RcHm_v2.0_Chr7g0212791 Rosa chinensis
Rhsim07G0134900 Rhododendron simsii
Sabra01G0103600 Salix brachista
Sabra03G0067500 Salix brachista
SalBow1G3665 Salvia bowleyana
Sc07g0008420 Simmondsia chinensis
Sed0013554 Sechium edule
Sed0022644 Sechium edule
SEGI_01860 Sequoiadendron giganteum
SEGI_11015 Sequoiadendron giganteum
SEGI_13950 Sequoiadendron giganteum
SEGI_16838 Sequoiadendron giganteum
SGA_v2.0_scaffold111G31382 Striga asiatica
SGA_v2.0_scaffold144G35863 Striga asiatica
SMO298G0021 Selaginella moellendorffii
Solyc08g076220.3 Solanum lycopersicum
Sopen08g024860 Solanum pennellii
Sp1g27720 Schrenkiella parvula
TAR374G0482 Trochodendron aralioides
TAR622G0569 Trochodendron aralioides
TAR629G0526 Trochodendron aralioides
TAR697G0002 Trochodendron aralioides
THA.LOC104798502 Tarenaya hassleriana
THA.LOC104812730 Tarenaya hassleriana
Thecc.03G313800 Theobroma cacao
Thhalv10007801m.g Eutrema salsugineum
TPR.G9091 Trifolium pratense
TWI60G0039 Tripterygium wilfordii
TWI81G0504 Tripterygium wilfordii
unitig_32.g10970 Utricularia gibba
unitig_748.g8135 Utricularia gibba
vmacro22044 Vaccinium macrocarpon
vmacro23512 Vaccinium macrocarpon
VMungo1215G0689 Vigna mungo
Zm00001eb072030 Zea mays
Zm00001eb188120 Zea mays
Zm00001eb251520 Zea mays

User provided reference genes

Program Settings