Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A08p10610 Brassica napus
A09p34840 Brassica napus
Aa31LG2G14560 Aethionema arabicum
Aa31LG9G15910 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.4102 Anthoceros agrestis
Actinidia03561 Actinidia chinensis
Actinidia05824 Actinidia chinensis
Actinidia31742 Actinidia chinensis
Ah.02g117380 Amaranthus hybridus
Ah.12g056080 Amaranthus hybridus
AL1G49680 Arabidopsis lyrata
arahy.Tifrunner.gnm1.ann1.PR9TQC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RIG8IM Arachis hypogaea
AT1G31350 Arabidopsis thaliana
ATR0829G197 Amborella trichopoda
Atru.chr6.2112 Acer truncatum
AUR62007434 Chenopodium quinoa
AUR62027304 Chenopodium quinoa
BcaB04g18159 Brassica carinata
BcaB07g32798 Brassica carinata
BcaC05g27169 Brassica carinata
BcaC07g37761 Brassica carinata
BolC5t31795H Brassica oleracea
BolC8t48146H Brassica oleracea
BraA08t33060Z Brassica rapa
BraA09t39016Z Brassica rapa
C05p30610 Brassica napus
CAN.G1914.1 Capsicum annuum
CAN.G195.40 Capsicum annuum
CAN.G992.1 Capsicum annuum
CANSAT33G0001 Cannabis sativa
CARHR030830 Cardamine hirsuta
Carub.0001s2980 Capsella rubella
Ca_25082_v3 Cicer arietinum L.
Cc00_g02500 Coffea canephora
Cc02_g26400 Coffea canephora
CDE04G1214 Ceratophyllum demersum
CDE06G0468 Ceratophyllum demersum
Ciclev10001461m.g Citrus clementina
Ciclev10031775m.g Citrus clementina
CiPaw.11G104700 Carya illinoinensis
CiPaw.12G072600 Carya illinoinensis
ClCG10G000890 Citrullus lanatus
COL.COLO4_08515 Corchorus olitorius
COL.COLO4_16709 Corchorus olitorius
Cpa.g.sc137.22 Carica papaya
CsaV3_3G000970 Cucumis sativus L.
CSS0032439 Camellia sinensis var. sinensis
CSS0044447 Camellia sinensis var. sinensis
DCAR_000699 Daucus carota
Dinv37464 Davidia involucrata
Dinv43973 Davidia involucrata
Duzib106G0525 Durio zibethinus
Duzib128G0275 Durio zibethinus
Duzib205G0814 Durio zibethinus
ECA236G1958 Erigeron canadensis
ECA247G1450 Erigeron canadensis
ECA248G3715 Erigeron canadensis
EL10Ac5g11894 Beta vulgaris
Eucgr.E01206 Eucalyptus grandis
FAN04G3114 Fragaria x ananassa
FAN08G0821 Fragaria x ananassa
FAN13G1537 Fragaria x ananassa
FAN18G3693 Fragaria x ananassa
FvH4_5g24190 Fragaria vesca
Glyma.01G150300 Glycine max
Glyma.09G215301 Glycine max
Gohir.A11G056500 Gossypium hirsutum
Gohir.A11G224500 Gossypium hirsutum
Gohir.A11G224600 Gossypium hirsutum
Gohir.D11G060700 Gossypium hirsutum
Gohir.D11G235966 Gossypium hirsutum
Gohir.D11G236032 Gossypium hirsutum
Gorai.007G065400 Gossypium raimondii
Gorai.007G248900 Gossypium raimondii
Gorai.007G249000 Gossypium raimondii
HanXRQChr04g0112731 Helianthus annuus
HanXRQChr15g0467781 Helianthus annuus
Haze_08000 Corylus avellana
Hma1.2p1_0268F.1_g107700 Hydrangea macrophylla
HPP92_002507 Vanilla planifolia
HPP92_002554 Vanilla planifolia
Lalb_Chr16g0380621 Lupinus albus
Lj2g0006522 Lotus japonicus
Lj7A559T90 Lonicera japonica
Lsat_1_v5_gn_1_85701 Lactuca sativa
Lsat_1_v5_gn_8_92780 Lactuca sativa
Lsat_1_v5_gn_9_8360 Lactuca sativa
Manes.04G035600 Manihot esculenta
Manes.09G132100 Manihot esculenta
Manes.11G129100 Manihot esculenta
Mapoly0152s0026 Marchantia polymorpha
MBI04_g30771_MAGBIO Magnolia biondii
MD06G1017400 Malus domestica
MD06G1017500 Malus domestica
MD07G1079500 Malus domestica
Medtr5g026580 Medicago truncatula
MELO3C013784.2 Cucumis melo
Migut.A00505 Erythranthe guttata
Migut.E01395 Erythranthe guttata
MSTRG.11836 Avicennia marina
MSTRG.1744 Avicennia marina
Nitab4.5_0000183g0150 Nicotiana tabacum
Nitab4.5_0000860g0020 Nicotiana tabacum
Nitab4.5_0004594g0010 Nicotiana tabacum
Nitab4.5_0004800g0070 Nicotiana tabacum
Nitab4.5_0008438g0040 Nicotiana tabacum
Nitab4.5_0012693g0010 Nicotiana tabacum
Nn1g09146 Nelumbo nucifera
Nn2g10241 Nelumbo nucifera
Nn3g19218 Nelumbo nucifera
Oeu002016.1 Olea europaea
Oeu024950.1 Olea europaea
Oeu028125.1 Olea europaea
Oeu044971.2 Olea europaea
Oeu047730.1 Olea europaea
Os06g0711700 Oryza sativa ssp. japonica
Peaxi162Scf00045g01323 Petunia axillaris
Peaxi162Scf00445g00073 Petunia axillaris
Peaxi162Scf00592g00449 Petunia axillaris
PGR042G1155 Punica granatum
PGR042G3024 Punica granatum
PGSC0003DMG400001786 Solanum tuberosum
PGSC0003DMG400004468 Solanum tuberosum
PGSC0003DMG400018922 Solanum tuberosum
Phvul.002G126700 Phaseolus vulgaris
Potri.001G230600 Populus trichocarpa
Potri.009G024000 Populus trichocarpa
Potri.019G044000 Populus trichocarpa
Pp3c11_9470 Physcomitrium patens
Pp3c1_5280 Physcomitrium patens
Pp3c2_34130 Physcomitrium patens
Pp3c7_18490 Physcomitrium patens
Prupe.2G102300 Prunus persica
Prupe.2G102400 Prunus persica
Prupe.5G018500 Prunus persica
Psat2g143160 Pisum sativum
PSO210G4177 Papaver somniferum
QL04p052597 Quercus lobata
QL12p002001 Quercus lobata
QL12p002012 Quercus lobata
RcHm_v2.0_Chr7g0213971 Rosa chinensis
Rhsim07G0046300 Rhododendron simsii
Rhsim07G0174300 Rhododendron simsii
Sabra09G0015100 Salix brachista
Sabra16G0138100 Salix brachista
Sabra19G0054500 Salix brachista
SalBow4G0716 Salvia bowleyana
SalBow4G1509 Salvia bowleyana
SalBow8G3765 Salvia bowleyana
Sc22g0002160 Simmondsia chinensis
Sc22g0002170 Simmondsia chinensis
Sc22g0002180 Simmondsia chinensis
Sed0000266 Sechium edule
SEGI_05392 Sequoiadendron giganteum
SGA_v2.0_scaffold121G33042 Striga asiatica
SGA_v2.0_scaffold144G35820 Striga asiatica
SGA_v2.0_scaffold144G35821 Striga asiatica
SGA_v2.0_scaffold4G02215 Striga asiatica
SMO119G0442 Selaginella moellendorffii
Solyc01g081210.4 Solanum lycopersicum
Solyc08g005930.1 Solanum lycopersicum
Solyc08g074660.1 Solanum lycopersicum
Sopen01g032790 Solanum pennellii
Sopen08g001900 Solanum pennellii
Sopen08g023250 Solanum pennellii
Sp1g27190 Schrenkiella parvula
TAR629G2971 Trochodendron aralioides
THA.LOC104814373 Tarenaya hassleriana
THA.LOC104820820 Tarenaya hassleriana
Thecc.03G324200 Theobroma cacao
Thecc.05G232500 Theobroma cacao
Thhalv10009358m.g Eutrema salsugineum
TPR.G17256 Trifolium pratense
TWI34G0103 Tripterygium wilfordii
TWI60G1022 Tripterygium wilfordii
unitig_747.g21374 Utricularia gibba
vmacro05084 Vaccinium macrocarpon
vmacro13588 Vaccinium macrocarpon
VMungo0540G0060 Vigna mungo
VMungo0540G1198 Vigna mungo
VMungo1215G3229 Vigna mungo
Zm00001eb227720 Zea mays

User provided reference genes

Program Settings