Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p50350 Brassica napus
A04p30050 Brassica napus
A05p06360 Brassica napus
A06p44900 Brassica napus
A09p23140 Brassica napus
Aa31LG2G12410 Aethionema arabicum
Aa31LG5G19480 Aethionema arabicum
Aa31LG9G5380 Aethionema arabicum
Actinidia11903 Actinidia chinensis
Actinidia39257 Actinidia chinensis
Ah.09g233900 Amaranthus hybridus
AL4G37770 Arabidopsis lyrata
AL7G37500 Arabidopsis lyrata
AL8G10320 Arabidopsis lyrata
Aqoxy4G01086 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.UZ71G8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YY2BB8 Arachis hypogaea
AT2G40113 Arabidopsis thaliana
AT4G17215 Arabidopsis thaliana
AT5G47635 Arabidopsis thaliana
ATR0827G170 Amborella trichopoda
Atru.chr1.2273 Acer truncatum
AUR62012843 Chenopodium quinoa
AUR62021816 Chenopodium quinoa
BcaB02g09050 Brassica carinata
BcaB02g09051 Brassica carinata
BcaB06g29129 Brassica carinata
BcaB07g30768 Brassica carinata
BcaC02g07354 Brassica carinata
BcaC03g16979 Brassica carinata
BcaC04g21612 Brassica carinata
BcaC06g31357 Brassica carinata
BcaC06g33549 Brassica carinata
BcaC06g34236 Brassica carinata
BcaC09g50449 Brassica carinata
BcaNung00112 Brassica carinata
BcaNung03472 Brassica carinata
BcaNung03474 Brassica carinata
BolC1t02480H Brassica oleracea
BolC4t22355H Brassica oleracea
BolC4t28284H Brassica oleracea
BolC7t43669H Brassica oleracea
BolC7t45373H Brassica oleracea
BolC9t55850H Brassica oleracea
BraA01t01941Z Brassica rapa
BraA03t14124Z Brassica rapa
BraA04t18501Z Brassica rapa
BraA05t19604Z Brassica rapa
BraA06t27361Z Brassica rapa
BraA09t37917Z Brassica rapa
C01p25300 Brassica napus
C02p48790 Brassica napus
C04p67800 Brassica napus
C07p31280 Brassica napus
C07p48660 Brassica napus
C09p29870 Brassica napus
CAN.G1156.14 Capsicum annuum
CAN.G1186.30 Capsicum annuum
CANSAT56G1869 Cannabis sativa
CARHR135090 Cardamine hirsuta
CARHR173680 Cardamine hirsuta
CARHR223820 Cardamine hirsuta
Carub.0004s2229 Capsella rubella
Carub.0007s2420 Capsella rubella
Carub.0008s0015 Capsella rubella
Ca_20995_v3 Cicer arietinum L.
Cc09_g00350 Coffea canephora
CDE10G1059 Ceratophyllum demersum
Cfa000041 Carpinus fangiana
Ciclev10016770m.g Citrus clementina
CiPaw.09G108600 Carya illinoinensis
ClCG01G010750 Citrullus lanatus
COL.COLO4_31936 Corchorus olitorius
Cpa.g.sc27.232 Carica papaya
Cpa.g.sc27.233 Carica papaya
Cpa.g.sc27.234 Carica papaya
CsaV3_1G015780 Cucumis sativus L.
CsaV3_UNG065500 Cucumis sativus L.
CSS0009294 Camellia sinensis var. sinensis
CSS0045719 Camellia sinensis var. sinensis
DCAR_030834 Daucus carota
Dinv15342 Davidia involucrata
Dinv24740 Davidia involucrata
Duzib192G0597 Durio zibethinus
ECA248G3040 Erigeron canadensis
EL10Ac8g20260 Beta vulgaris
Eucgr.E03855 Eucalyptus grandis
Eucgr.L00154 Eucalyptus grandis
Eucgr.L00155 Eucalyptus grandis
FAN21G2431 Fragaria x ananassa
FAN25G2178 Fragaria x ananassa
FvH4_3g00370 Fragaria vesca
Glyma.17G005900 Glycine max
Gohir.A06G204100 Gossypium hirsutum
Gohir.D06G217400 Gossypium hirsutum
Gorai.010G248800 Gossypium raimondii
GSVIVG01005138001 Vitis vinifera
HanXRQChr01g0003591 Helianthus annuus
HanXRQChr15g0470241 Helianthus annuus
Haze_07014 Corylus avellana
Hma1.2p1_1175F.1_g263980 Hydrangea macrophylla
Hma1.2p1_1175F.1_g263990 Hydrangea macrophylla
HPP92_024932 Vanilla planifolia
HPP92_024936 Vanilla planifolia
Lalb_Chr13g0304361 Lupinus albus
Lalb_Chr15g0088211 Lupinus albus
Lj2C256G8 Lonicera japonica
Lj4g0001357 Lotus japonicus
Lj6g0023004 Lotus japonicus
Lsat_1_v5_gn_1_130120 Lactuca sativa
Lsat_1_v5_gn_7_13080 Lactuca sativa
Manes.09G083000 Manihot esculenta
MBI18_g27019_MAGBIO Magnolia biondii
MBI18_g42884_MAGBIO Magnolia biondii
MBI19_g14888_MAGBIO Magnolia biondii
MD05G1360900 Malus domestica
MD10G1338600 Malus domestica
Medtr4g133932 Medicago truncatula
MELO3C025526.2 Cucumis melo
Migut.H01629 Erythranthe guttata
Migut.M01442 Erythranthe guttata
MSTRG.13107 Avicennia marina
MSTRG.14590 Avicennia marina
MSTRG.7132 Avicennia marina
Nitab4.5_0000143g0280 Nicotiana tabacum
Nitab4.5_0001198g0070 Nicotiana tabacum
Nn1g07502 Nelumbo nucifera
Oeu002779.1 Olea europaea
Oeu025400.1 Olea europaea
Oeu025960.1 Olea europaea
Oeu057021.1 Olea europaea
Os10g0206500 Oryza sativa ssp. japonica
Os10g0208600 Oryza sativa ssp. japonica
Peaxi162Scf00442g00073 Petunia axillaris
Peaxi162Scf00558g00515 Petunia axillaris
PGR004G2813 Punica granatum
PGR042G2523 Punica granatum
PGSC0003DMG400013274 Solanum tuberosum
PGSC0003DMG400013298 Solanum tuberosum
Phvul.003G086700 Phaseolus vulgaris
Potri.006G005600 Populus trichocarpa
Potri.016G006200 Populus trichocarpa
Prupe.4G004300 Prunus persica
Psat4g002880 Pisum sativum
PSO541G3650 Papaver somniferum
PSO675G1588 Papaver somniferum
QL05p067831 Quercus lobata
RcHm_v2.0_Chr5g0000571 Rosa chinensis
Rhsim13G0141000 Rhododendron simsii
Sabra06G0004500 Salix brachista
Sabra16G0011000 Salix brachista
SalBow8G1906 Salvia bowleyana
Sc05g0009870 Simmondsia chinensis
Sc24g0000400 Simmondsia chinensis
Sed0014180 Sechium edule
Sed0021615 Sechium edule
SEGI_28043 Sequoiadendron giganteum
SGA_v2.0_scaffold186G40120 Striga asiatica
SGA_v2.0_scaffold49G18223 Striga asiatica
SGA_v2.0_scaffold7G03701 Striga asiatica
Solyc11g012170.1 Solanum lycopersicum
Solyc11g012705.2 Solanum lycopersicum
Sopen11g006960 Solanum pennellii
Sopen11g007440 Solanum pennellii
Sp2g12340 Schrenkiella parvula
Sp4g22430 Schrenkiella parvula
Sp7g16980 Schrenkiella parvula
TAR626G0912 Trochodendron aralioides
THA.LOC104798379 Tarenaya hassleriana
THA.LOC104806736 Tarenaya hassleriana
Thecc.06G240300 Theobroma cacao
Thhalv10001056m.g Eutrema salsugineum
Thhalv10017342m.g Eutrema salsugineum
Thhalv10026465m.g Eutrema salsugineum
TPR.G5987 Trifolium pratense
TWI38G1412 Tripterygium wilfordii
TWI38G2030 Tripterygium wilfordii
unitig_52.g17560 Utricularia gibba
vmacro03611 Vaccinium macrocarpon
vmacro03612 Vaccinium macrocarpon
vmacro23224 Vaccinium macrocarpon
VMungo1215G0779 Vigna mungo
Zm00001eb050510 Zea mays

User provided reference genes

Program Settings