Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p01170 Brassica napus
A09p57340 Brassica napus
Aa31LG7G14100 Aethionema arabicum
Actinidia11935 Actinidia chinensis
Actinidia36390 Actinidia chinensis
AL4G12240 Arabidopsis lyrata
AL7G12820 Arabidopsis lyrata
Aqoxy4G03244 Aquilegia oxysepala
Aqoxy6G00872 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea
AT2G22720 Arabidopsis thaliana
AT4G37860 Arabidopsis thaliana
ATR0584G133 Amborella trichopoda
ATR0706G065 Amborella trichopoda
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum
AUR62003259 Chenopodium quinoa
AUR62027209 Chenopodium quinoa
BcaB03g14458 Brassica carinata
BcaB03g15791 Brassica carinata
BcaB06g27818 Brassica carinata
BcaC07g41041 Brassica carinata
BcaNung00967 Brassica carinata
BcaNung00969 Brassica carinata
BolC1t00129H Brassica oleracea
BolC4t26775H Brassica oleracea
BolC8t51612H Brassica oleracea
BraA01t00115Z Brassica rapa
BraA04t17347Z Brassica rapa
BraA09t41127Z Brassica rapa
C01p01330 Brassica napus
C08p40430 Brassica napus
CAN.G1061.16 Capsicum annuum
CAN.G11.21 Capsicum annuum
CAN.G630.65 Capsicum annuum
CANSAT01G3253 Cannabis sativa
CANSAT11G2490 Cannabis sativa
CARHR114000 Cardamine hirsuta
CARHR207720 Cardamine hirsuta
CARHR246250 Cardamine hirsuta
Carub.0004s0185 Capsella rubella
Ca_06073_v3 Cicer arietinum L.
CBR_g55949 Chara braunii
Cc07_g07720 Coffea canephora
CDE10G0649 Ceratophyllum demersum
CDE10G0903 Ceratophyllum demersum
Cfa006814 Carpinus fangiana
Ciclev10025536m.g Citrus clementina
CiPaw.12G004100 Carya illinoinensis
CiPaw.12G004300 Carya illinoinensis
ClCG01G018090 Citrullus lanatus
COL.COLO4_36255 Corchorus olitorius
Cpa.g.sc129.28 Carica papaya
CsaV3_6G044630 Cucumis sativus L.
CSS0006986 Camellia sinensis var. sinensis
CSS0008611 Camellia sinensis var. sinensis
CSS0014575 Camellia sinensis var. sinensis
CSS0018014 Camellia sinensis var. sinensis
CSS0020555 Camellia sinensis var. sinensis
DCAR_025843 Daucus carota
Dinv26992 Davidia involucrata
Dinv36994 Davidia involucrata
Dinv36995 Davidia involucrata
Duzib147G1539 Durio zibethinus
Duzib264G0286 Durio zibethinus
ECA233G0477 Erigeron canadensis
EL10As13g24049 Beta vulgaris
Eucgr.D00182 Eucalyptus grandis
FAN19G3013 Fragaria x ananassa
FAN23G1272 Fragaria x ananassa
FvH4_1g18820 Fragaria vesca
Glyma.01G097200 Glycine max
Glyma.08G272800 Glycine max
Gohir.A02G147000 Gossypium hirsutum
Gohir.D03G033400 Gossypium hirsutum
Gorai.003G035000 Gossypium raimondii
GSVIVG01003708001 Vitis vinifera
HanXRQChr12g0366081 Helianthus annuus
HanXRQChr17g0561681 Helianthus annuus
Haze_03945 Corylus avellana
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla
HPP92_024603 Vanilla planifolia
Hund23622 Selenicereus undatus
Lalb_Chr05g0216141 Lupinus albus
Lalb_Chr09g0325721 Lupinus albus
Lalb_Chr16g0381411 Lupinus albus
Lj2g0016248 Lotus japonicus
Lj3g0005458 Lotus japonicus
Lj4A174T33 Lonicera japonica
Lj4g0014652 Lotus japonicus
Lsat_1_v5_gn_8_34760 Lactuca sativa
Manes.06G161600 Manihot esculenta
Manes.12G120000 Manihot esculenta
Manes.13G105200 Manihot esculenta
MBI16_g20893_MAGBIO Magnolia biondii
MBI16_g41329_MAGBIO Magnolia biondii
MD01G1046400 Malus domestica
MD02G1268800 Malus domestica
MD02G1269400 Malus domestica
MD02G1269600 Malus domestica
MD16G1281700 Malus domestica
Medtr5g030610 Medicago truncatula
Medtr5g430710 Medicago truncatula
MELO3C007686.2 Cucumis melo
Migut.L00442 Erythranthe guttata
MSTRG.3501 Avicennia marina
Nitab4.5_0000093g0190 Nicotiana tabacum
Nitab4.5_0000396g0250 Nicotiana tabacum
Nitab4.5_0000465g0130 Nicotiana tabacum
Nitab4.5_0014307g0010 Nicotiana tabacum
Nn1g05776 Nelumbo nucifera
Oeu012608.1 Olea europaea
Oeu054739.1 Olea europaea
Oeu054741.2 Olea europaea
Os02g0664400 Oryza sativa ssp. japonica
Os11g0296800 Oryza sativa ssp. japonica
Peaxi162Scf00118g00109 Petunia axillaris
PGR102G0988 Punica granatum
PGSC0003DMG400016686 Solanum tuberosum
PGSC0003DMG400030618 Solanum tuberosum
Phvul.002G139100 Phaseolus vulgaris
Phvul.003G285300 Phaseolus vulgaris
Potri.001G257300 Populus trichocarpa
Potri.005G148700 Populus trichocarpa
Potri.007G009700 Populus trichocarpa
Prupe.1G068500 Prunus persica
Prupe.2G308100 Prunus persica
Prupe.6G211200 Prunus persica
Psat2g135720 Pisum sativum
PSO210G1228 Papaver somniferum
PSO761G0336 Papaver somniferum
PSO782G1301 Papaver somniferum
PSO832G4530 Papaver somniferum
QL06p037705 Quercus lobata
RcHm_v2.0_Chr2g0109681 Rosa chinensis
Sabra04G0103600 Salix brachista
Sabra07G0007400 Salix brachista
Sabra16G0155500 Salix brachista
Sabra16G0157300 Salix brachista
SalBow5G1957 Salvia bowleyana
SalBow7G4044 Salvia bowleyana
Sc03g0000640 Simmondsia chinensis
Sc16g0000790 Simmondsia chinensis
Sc16g0000800 Simmondsia chinensis
Sed0009716 Sechium edule
Sed0014908 Sechium edule
SEGI_29083 Sequoiadendron giganteum
SEGI_33741 Sequoiadendron giganteum
SGA_v2.0_scaffold13G06400 Striga asiatica
SGA_v2.0_scaffold174G39242 Striga asiatica
SGA_v2.0_scaffold55G19776 Striga asiatica
SHI12093 Sapria himalayana
SHI12094 Sapria himalayana
Solyc02g091730.3 Solanum lycopersicum
Solyc03g043760.4 Solanum lycopersicum
Sopen02g036340 Solanum pennellii
Sopen03g007620 Solanum pennellii
Sp4g01710 Schrenkiella parvula
Sp7g35500 Schrenkiella parvula
TAR376G0930 Trochodendron aralioides
TAR381G0096 Trochodendron aralioides
TAR625G0952 Trochodendron aralioides
TAR628G0576 Trochodendron aralioides
TAR628G1156 Trochodendron aralioides
THA.LOC104804189 Tarenaya hassleriana
THA.LOC104807653 Tarenaya hassleriana
Thecc.01G082000 Theobroma cacao
Thhalv10000080m.g Eutrema salsugineum
Thhalv10026061m.g Eutrema salsugineum
TPR.G1045 Trifolium pratense
TWI53G0148 Tripterygium wilfordii
unitig_0.g2606 Utricularia gibba
unitig_88.g27718 Utricularia gibba
vmacro07413 Vaccinium macrocarpon
vmacro20437 Vaccinium macrocarpon
VMungo0251G1204 Vigna mungo
VMungo1215G3108 Vigna mungo
VMungo1309G1560 Vigna mungo
Zm00001eb074340 Zea mays
Zm00001eb186830 Zea mays
Zm00001eb429410 Zea mays

User provided reference genes

Program Settings