Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p36010 Brassica napus
A09p46790 Brassica napus
Aa31LG3G1840 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.3385 Anthoceros agrestis
Actinidia05324 Actinidia chinensis
Actinidia11270 Actinidia chinensis
Actinidia26484 Actinidia chinensis
Ah.12g059970 Amaranthus hybridus
AL3G20500 Arabidopsis lyrata
AL5G34790 Arabidopsis lyrata
AL6G11380 Arabidopsis lyrata
Aqoxy1G00886 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.C3169U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R5ZI8K Arachis hypogaea
AT3G09350 Arabidopsis thaliana
AT3G53800 Arabidopsis thaliana
AT5G02150 Arabidopsis thaliana
ATR0559G081 Amborella trichopoda
ATR0697G190 Amborella trichopoda
Atru.chr8.2010 Acer truncatum
Atru.chr8.2011 Acer truncatum
AUR62042383 Chenopodium quinoa
AUR62043522 Chenopodium quinoa
BcaB01g00236 Brassica carinata
BcaB01g06216 Brassica carinata
BcaB03g11607 Brassica carinata
BcaB04g18532 Brassica carinata
BcaB05g21469 Brassica carinata
BcaC01g04230 Brassica carinata
BcaC05g29519 Brassica carinata
BcaC05g29662 Brassica carinata
BcaC07g39737 Brassica carinata
BolC3t16634H Brassica oleracea
BolC5t34516H Brassica oleracea
BolC7t44242H Brassica oleracea
BolC8t50511H Brassica oleracea
BraA03t12773Z Brassica rapa
BraA05t22745Z Brassica rapa
BraA09t40139Z Brassica rapa
C03p43660 Brassica napus
C05p47620 Brassica napus
C05p58660 Brassica napus
C07p37320 Brassica napus
C08p29100 Brassica napus
CAN.G132.11 Capsicum annuum
CAN.G397.48 Capsicum annuum
CAN.G597.5 Capsicum annuum
CAN.G771.68 Capsicum annuum
CAN.G947.5 Capsicum annuum
CANSAT35G0909 Cannabis sativa
CARHR083710 Cardamine hirsuta
CARHR163710 Cardamine hirsuta
CARHR211210 Cardamine hirsuta
Carub.0003s0846 Capsella rubella
Carub.0005s2038 Capsella rubella
Carub.0006s0099 Capsella rubella
Ca_11500_v3 Cicer arietinum L.
CBR_g66724 Chara braunii
Cc06_g02380 Coffea canephora
CDE04G2827 Ceratophyllum demersum
CDE07G1498 Ceratophyllum demersum
Cfa017343 Carpinus fangiana
Ciclev10011911m.g Citrus clementina
CiPaw.09G195400 Carya illinoinensis
ClCG04G008060 Citrullus lanatus
COL.COLO4_14767 Corchorus olitorius
Cpa.g.sc40.66 Carica papaya
Cre09.g397512 Chlamydomonas reinhardtii
CsaV3_4G025150 Cucumis sativus L.
CSS0018872 Camellia sinensis var. sinensis
CSS0021952 Camellia sinensis var. sinensis
DCAR_012112 Daucus carota
Dinv35578 Davidia involucrata
Dinv37149 Davidia involucrata
Duzib128G0550 Durio zibethinus
ECA248G3146 Erigeron canadensis
ECA248G3804 Erigeron canadensis
ECA248G3834 Erigeron canadensis
EL10As1g23134 Beta vulgaris
Eucgr.A01287 Eucalyptus grandis
FAN02G3395 Fragaria x ananassa
FAN05G1146 Fragaria x ananassa
FAN05G5423 Fragaria x ananassa
FAN08G2733 Fragaria x ananassa
FAN09G2852 Fragaria x ananassa
FAN13G1535 Fragaria x ananassa
FAN14G0506 Fragaria x ananassa
FAN14G3612 Fragaria x ananassa
FAN18G0330 Fragaria x ananassa
FvH4_5g15390 Fragaria vesca
FvH4_6g11350 Fragaria vesca
Glyma.01G103200 Glycine max
Glyma.03G070400 Glycine max
Gohir.A04G083600 Gossypium hirsutum
Gohir.D04G122300 Gossypium hirsutum
Gorai.012G105200 Gossypium raimondii
GSVIVG01034132001 Vitis vinifera
HanXRQChr01g0003311 Helianthus annuus
HanXRQChr13g0406761 Helianthus annuus
Haze_20825 Corylus avellana
Hma1.2p1_0877F.1_g231720 Hydrangea macrophylla
HPP92_006643 Vanilla planifolia
Hund07755 Selenicereus undatus
Hund07758 Selenicereus undatus
Hund29077 Selenicereus undatus
Lalb_Chr07g0192991 Lupinus albus
Lalb_Chr12g0209541 Lupinus albus
Lj2A91G57 Lonicera japonica
Lj3A965G75 Lonicera japonica
Lj3g0027938 Lotus japonicus
Lsat_1_v5_gn_5_154881 Lactuca sativa
Manes.09G092685 Manihot esculenta
Mapoly0070s0083 Marchantia polymorpha
MBI05_g35626_MAGBIO Magnolia biondii
MCO10G278 Micromonas commoda
MD04G1131900 Malus domestica
MD12G1145000 Malus domestica
Medtr4g021570 Medicago truncatula
MELO3C003143.2 Cucumis melo
Migut.J00308 Erythranthe guttata
MSTRG.10251 Avicennia marina
MSTRG.19074 Avicennia marina
Nitab4.5_0000705g0070 Nicotiana tabacum
Nitab4.5_0003394g0020 Nicotiana tabacum
Nn2g13418 Nelumbo nucifera
Oeu001856.1 Olea europaea
Oeu006893.1 Olea europaea
Oeu010100.1 Olea europaea
Oeu023073.1 Olea europaea
Os03g0271400 Oryza sativa ssp. japonica
Os03g0822700 Oryza sativa ssp. japonica
Peaxi162Scf00527g00735 Petunia axillaris
PGR031G2878 Punica granatum
PGSC0003DMG400008824 Solanum tuberosum
Phvul.010G011500 Phaseolus vulgaris
Potri.006G088000 Populus trichocarpa
Potri.016G100500 Populus trichocarpa
Pp3c16_19440 Physcomitrium patens
Pp3c5_26180 Physcomitrium patens
PRCOL_00004554 Prasinoderma coloniale
Prupe.6G258500 Prunus persica
Psat7g237280 Pisum sativum
PSO339G0014 Papaver somniferum
PSO478G2467 Papaver somniferum
PSO513G0124 Papaver somniferum
PSO675G1352 Papaver somniferum
PSO832G4203 Papaver somniferum
QL07p026959 Quercus lobata
QL07p030140 Quercus lobata
QL07p030873 Quercus lobata
RcHm_v2.0_Chr3g0462931 Rosa chinensis
RcHm_v2.0_Chr7g0180681 Rosa chinensis
Rhsim05G0194700 Rhododendron simsii
Sabra06G0067100 Salix brachista
Sc07g0007060 Simmondsia chinensis
Sed0012536 Sechium edule
SEGI_14146 Sequoiadendron giganteum
SEGI_33439 Sequoiadendron giganteum
SGA_v2.0_scaffold126G33762 Striga asiatica
SGA_v2.0_scaffold75G24963 Striga asiatica
SGA_v2.0_scaffold94G28572 Striga asiatica
SHI12711 Sapria himalayana
SMO302G0018 Selaginella moellendorffii
Solyc09g011030.3 Solanum lycopersicum
Sopen09g005760 Solanum pennellii
Sp3g07730 Schrenkiella parvula
Sp5g08580 Schrenkiella parvula
Sp6g40290 Schrenkiella parvula
TAR369G0528 Trochodendron aralioides
TAR560G0002 Trochodendron aralioides
TAR623G0629 Trochodendron aralioides
THA.LOC104806556 Tarenaya hassleriana
THA.LOC104816257 Tarenaya hassleriana
THA.LOC104823413 Tarenaya hassleriana
Thecc.05G036000 Theobroma cacao
Thhalv10010482m.g Eutrema salsugineum
Thhalv10014140m.g Eutrema salsugineum
Thhalv10020978m.g Eutrema salsugineum
TPR.G5579 Trifolium pratense
TWI38G1706 Tripterygium wilfordii
unitig_8.g4279 Utricularia gibba
vmacro20176 Vaccinium macrocarpon
VMungo0331G1001 Vigna mungo
Zm00001eb012160 Zea mays
Zm00001eb062800 Zea mays
Zm00001eb211620 Zea mays

User provided reference genes

Program Settings