Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p33750 Brassica napus
A08p21800 Brassica napus
A09p11460 Brassica napus
Aa31LG6G12590 Aethionema arabicum
Aa31LG8G14900 Aethionema arabicum
Actinidia17383 Actinidia chinensis
Actinidia22909 Actinidia chinensis
Ah.03g148400 Amaranthus hybridus
AL3G50590 Arabidopsis lyrata
AL7G15520 Arabidopsis lyrata
Aqoxy1G00525 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.XW297T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZVTH8F Arachis hypogaea
AT2G17630 Arabidopsis thaliana
AT4G35630 Arabidopsis thaliana
ATR0199G031 Amborella trichopoda
ATR0208G001 Amborella trichopoda
ATR0329G002 Amborella trichopoda
ATR0329G021 Amborella trichopoda
ATR0553G001 Amborella trichopoda
ATR0749G088 Amborella trichopoda
ATR0763G123 Amborella trichopoda
Atru.chr3.957 Acer truncatum
Atru.chr3.969 Acer truncatum
AUR62029452 Chenopodium quinoa
BcaB03g12420 Brassica carinata
BcaB07g31714 Brassica carinata
BcaB07g31718 Brassica carinata
BcaB07g31719 Brassica carinata
BcaC01g00508 Brassica carinata
BcaC04g22959 Brassica carinata
BolC3t18117H Brassica oleracea
BolC3t20334H Brassica oleracea
BolC9t54238H Brassica oleracea
BraA06t26310Z Brassica rapa
BraA08t34133Z Brassica rapa
BraA09t36786Z Brassica rapa
C03p58560 Brassica napus
C03p80790 Brassica napus
C09p13480 Brassica napus
CAN.G890.77 Capsicum annuum
CANSAT25G3704 Cannabis sativa
CARHR243980 Cardamine hirsuta
Carub.0003s3171 Capsella rubella
Carub.0007s0467 Capsella rubella
Ca_19449_v3 Cicer arietinum L.
Ca_24964_v3 Cicer arietinum L.
CBR_g34176 Chara braunii
CBR_g54970 Chara braunii
Cc07_g11670 Coffea canephora
CDE10G0671 Ceratophyllum demersum
CDE10G0952 Ceratophyllum demersum
Cfa007065 Carpinus fangiana
Cfa023378 Carpinus fangiana
Ciclev10025659m.g Citrus clementina
CiPaw.07G004000 Carya illinoinensis
CiPaw.08G180600 Carya illinoinensis
ClCG10G000330 Citrullus lanatus
COL.COLO4_22538 Corchorus olitorius
Cpa.g.sc535.4 Carica papaya
Cre07.g331550 Chlamydomonas reinhardtii
CsaV3_3G000370 Cucumis sativus L.
CSS0005640 Camellia sinensis var. sinensis
CSS0042676 Camellia sinensis var. sinensis
DCAR_030822 Daucus carota
Dinv09926 Davidia involucrata
Dinv11589 Davidia involucrata
Dinv17413 Davidia involucrata
Dinv18127 Davidia involucrata
Dinv29031 Davidia involucrata
Dinv34003 Davidia involucrata
Dinv37828 Davidia involucrata
Dinv40174 Davidia involucrata
Duzib147G1246 Durio zibethinus
Duzib264G0784 Durio zibethinus
ECA233G3718 Erigeron canadensis
EL10Ac6g15469 Beta vulgaris
Eucgr.I02231 Eucalyptus grandis
FAN19G1222 Fragaria x ananassa
FAN23G1902 Fragaria x ananassa
FAN26G0112 Fragaria x ananassa
FAN26G2468 Fragaria x ananassa
FAN28G1596 Fragaria x ananassa
FvH4_1g10530 Fragaria vesca
Glyma.01G159800 Glycine max
Glyma.02G041900 Glycine max
Glyma.11G084400 Glycine max
Glyma.19G232600 Glycine max
Gohir.A07G170700 Gossypium hirsutum
Gohir.D07G177500 Gossypium hirsutum
Gorai.001G198400 Gossypium raimondii
GSVIVG01006497001 Vitis vinifera
HanXRQChr02g0050301 Helianthus annuus
HanXRQChr09g0253801 Helianthus annuus
Haze_03674 Corylus avellana
Haze_26462 Corylus avellana
Hma1.2p1_0300F.1_g118150 Hydrangea macrophylla
Hma1.2p1_2491F.1_g323220 Hydrangea macrophylla
HPP92_002248 Vanilla planifolia
Lalb_Chr05g0211911 Lupinus albus
Lalb_Chr09g0321291 Lupinus albus
Lalb_Chr16g0377261 Lupinus albus
Lj2g0026838 Lotus japonicus
Lj4P233T12 Lonicera japonica
Lsat_1_v5_gn_8_23040 Lactuca sativa
Manes.01G153800 Manihot esculenta
Manes.02G112800 Manihot esculenta
Mapoly0033s0118 Marchantia polymorpha
MBI05_g22625_MAGBIO Magnolia biondii
MBI05_g40602_MAGBIO Magnolia biondii
MCO03G424 Micromonas commoda
MCO11G731 Micromonas commoda
MD02G1119200 Malus domestica
MD15G1233200 Malus domestica
Medtr8g074010 Medicago truncatula
MELO3C013732.2 Cucumis melo
Migut.H02194 Erythranthe guttata
MSTRG.3621 Avicennia marina
Nitab4.5_0000702g0080 Nicotiana tabacum
Nitab4.5_0002967g0020 Nicotiana tabacum
Oeu028610.1 Olea europaea
Os03g0157900 Oryza sativa ssp. japonica
Peaxi162Scf01446g00005 Petunia axillaris
PGR119G1501 Punica granatum
PGSC0003DMG400001524 Solanum tuberosum
Phvul.002G115000 Phaseolus vulgaris
Phvul.003G269100 Phaseolus vulgaris
Potri.005G099900 Populus trichocarpa
Pp3c9_15390 Physcomitrium patens
PRCOL_00000472 Prasinoderma coloniale
PRCOL_00006694 Prasinoderma coloniale
Prupe.7G180700 Prunus persica
Psat0s1725g0080 Pisum sativum
Psat2g150440 Pisum sativum
Psat3g043760 Pisum sativum
PSO063G5755 Papaver somniferum
PSO339G2900 Papaver somniferum
QL06p052753 Quercus lobata
QL06p052757 Quercus lobata
QL06p052789 Quercus lobata
QL06p053788 Quercus lobata
QL06p053814 Quercus lobata
QL06p053818 Quercus lobata
RcHm_v2.0_Chr2g0097441 Rosa chinensis
RcHm_v2.0_Chr2g0097541 Rosa chinensis
RcHm_v2.0_Chr2g0097551 Rosa chinensis
Rhsim10G0197900 Rhododendron simsii
Sabra05G0082600 Salix brachista
SalBow2G1655 Salvia bowleyana
SalBow3G3833 Salvia bowleyana
SalBow6G4873 Salvia bowleyana
SalBow6G6204 Salvia bowleyana
SalBow6G6332 Salvia bowleyana
SalBow7G3504 Salvia bowleyana
SalBow7G4144 Salvia bowleyana
SalBow8G1645 Salvia bowleyana
Sc07g0001320 Simmondsia chinensis
Sed0005072 Sechium edule
SEGI_08881 Sequoiadendron giganteum
SEGI_09550 Sequoiadendron giganteum
SGA_v2.0_scaffold108G30984 Striga asiatica
SGA_v2.0_scaffold2G00959 Striga asiatica
SHI29483 Sapria himalayana
SMO259G0019 Selaginella moellendorffii
Solyc02g082830.3 Solanum lycopersicum
Sopen02g027630 Solanum pennellii
Sp3g30960 Schrenkiella parvula
Sp7g33400 Schrenkiella parvula
TAR371G0743 Trochodendron aralioides
TAR376G1076 Trochodendron aralioides
TAR628G0600 Trochodendron aralioides
THA.LOC104807434 Tarenaya hassleriana
THA.LOC104819724 Tarenaya hassleriana
Thecc.01G007000 Theobroma cacao
Thhalv10023021m.g Eutrema salsugineum
Thhalv10025259m.g Eutrema salsugineum
TPR.G18309 Trifolium pratense
TPR.G25131 Trifolium pratense
TWI09G0502 Tripterygium wilfordii
TWI53G1012 Tripterygium wilfordii
unitig_699.g19680 Utricularia gibba
vmacro20525 Vaccinium macrocarpon
VMungo0251G3174 Vigna mungo
VMungo0720G2170 Vigna mungo
VMungo1215G1127 Vigna mungo
Zm00001eb004390 Zea mays

User provided reference genes

Program Settings