Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p10660 Brassica napus
A06p22070 Brassica napus
Aa31LG1G13260 Aethionema arabicum
Aa31LG4G13780 Aethionema arabicum
Actinidia06171 Actinidia chinensis
Actinidia35475 Actinidia chinensis
AL5G22410 Arabidopsis lyrata
AL6G33280 Arabidopsis lyrata
Aqoxy2G01022 Aquilegia oxysepala
Aqoxy4G02700 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.PLL1TV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W33SWH Arachis hypogaea
AT3G44280 Arabidopsis thaliana
AT5G22280 Arabidopsis thaliana
ATR0772G050 Amborella trichopoda
Atru.chr3.3157 Acer truncatum
BcaB01g04718 Brassica carinata
BcaB05g22254 Brassica carinata
BcaB05g22739 Brassica carinata
BcaB08g36812 Brassica carinata
BcaB08g37469 Brassica carinata
BcaC01g02028 Brassica carinata
BcaC01g06594 Brassica carinata
BcaC03g13871 Brassica carinata
BNapus_Darmor_BZH_scaffold_38p00770 Brassica napus
BolC2t07146H Brassica oleracea
BolC3t13700H Brassica oleracea
BolC3t19199H Brassica oleracea
BraA02t05648Z Brassica rapa
BraA03t10378Z Brassica rapa
BraA06t25297Z Brassica rapa
C02p10760 Brassica napus
C03p12270 Brassica napus
C03p69380 Brassica napus
CANSAT54G1844 Cannabis sativa
CANSAT64G0684 Cannabis sativa
CARHR104590 Cardamine hirsuta
CARHR191280 Cardamine hirsuta
Carub.0005s1000 Capsella rubella
Carub.0006s2002 Capsella rubella
Carub.0333s0001 Capsella rubella
Ca_19453_v3 Cicer arietinum L.
Cc00_g18350 Coffea canephora
Cc01_g08660 Coffea canephora
CDE04G3260 Ceratophyllum demersum
Ciclev10029624m.g Citrus clementina
CiPaw.10G014700 Carya illinoinensis
CiPaw.14G096800 Carya illinoinensis
ClCG02G022340 Citrullus lanatus
ClCG10G018570 Citrullus lanatus
COL.COLO4_04567 Corchorus olitorius
Cpa.g.sc195.36 Carica papaya
CsaV3_3G037680 Cucumis sativus L.
CsaV3_6G038470 Cucumis sativus L.
CSS0013947 Camellia sinensis var. sinensis
DCAR_020727 Daucus carota
Dinv22800 Davidia involucrata
Duzib093G1675 Durio zibethinus
ECA233G4994 Erigeron canadensis
ECA248G2122 Erigeron canadensis
EL10Ac7g16326 Beta vulgaris
Eucgr.J00533 Eucalyptus grandis
Eucgr.K02602 Eucalyptus grandis
FAN02G2975 Fragaria x ananassa
FAN05G5646 Fragaria x ananassa
FAN05G5661 Fragaria x ananassa
FAN11G1383 Fragaria x ananassa
FAN14G4527 Fragaria x ananassa
FAN21G0895 Fragaria x ananassa
FAN25G0104 Fragaria x ananassa
FvH4_3g25870 Fragaria vesca
FvH4_6g19790 Fragaria vesca
Glyma.12G186952 Glycine max
Glyma.13G314500 Glycine max
Gohir.A05G078900 Gossypium hirsutum
Gohir.A09G097300 Gossypium hirsutum
Gohir.A09G137200 Gossypium hirsutum
Gohir.A09G137436 Gossypium hirsutum
Gohir.A11G318200 Gossypium hirsutum
Gohir.D05G081800 Gossypium hirsutum
Gohir.D09G097100 Gossypium hirsutum
Gohir.D11G337400 Gossypium hirsutum
Gorai.006G113800 Gossypium raimondii
Gorai.006G151200 Gossypium raimondii
Gorai.006G151800 Gossypium raimondii
Gorai.007G367400 Gossypium raimondii
Gorai.009G083400 Gossypium raimondii
GSVIVG01036067001 Vitis vinifera
HanXRQChr01g0024911 Helianthus annuus
HanXRQChr02g0053831 Helianthus annuus
Haze_23336 Corylus avellana
Hma1.2p1_1178F.1_g264370 Hydrangea macrophylla
Hma1.2p1_2789F.1_g328565 Hydrangea macrophylla
HPP92_009784 Vanilla planifolia
Hund18786 Selenicereus undatus
Hund20939 Selenicereus undatus
Lalb_Chr14g0376021 Lupinus albus
Lalb_Chr19g0136331 Lupinus albus
Lj3g0015124 Lotus japonicus
Lj3g0024971 Lotus japonicus
Lj4g0016224 Lotus japonicus
Lsat_1_v5_gn_1_57561 Lactuca sativa
Manes.04G000300 Manihot esculenta
Manes.08G030600 Manihot esculenta
MBI01_g04518_MAGBIO Magnolia biondii
MBI17_g39787_MAGBIO Magnolia biondii
MD03G1151200 Malus domestica
MD11G1171800 Malus domestica
MD12G1033100 Malus domestica
MD14G1033900 Malus domestica
Medtr4g052250 Medicago truncatula
MELO3C009511.2 Cucumis melo
Migut.D02405 Erythranthe guttata
Migut.D02421 Erythranthe guttata
Migut.N02469 Erythranthe guttata
MSTRG.12378 Avicennia marina
MSTRG.17695 Avicennia marina
Nitab4.5_0001135g0080 Nicotiana tabacum
Nitab4.5_0003516g0080 Nicotiana tabacum
Nn6g34777 Nelumbo nucifera
Oeu035577.1 Olea europaea
Os02g0536100 Oryza sativa ssp. japonica
Os03g0836500 Oryza sativa ssp. japonica
Os07g0250300 Oryza sativa ssp. japonica
Peaxi162Scf00224g00520 Petunia axillaris
PGR004G0692 Punica granatum
PGR119G0448 Punica granatum
Phvul.005G121700 Phaseolus vulgaris
Potri.004G200200 Populus trichocarpa
Potri.006G206100 Populus trichocarpa
Potri.016G073500 Populus trichocarpa
Pp3c15_12320 Physcomitrium patens
Pp3c9_5580 Physcomitrium patens
Prupe.6G138900 Prunus persica
Prupe.7G099100 Prunus persica
Psat7g186360 Pisum sativum
PSO339G2942 Papaver somniferum
PSO801G0667 Papaver somniferum
QL01p011704 Quercus lobata
QL07p037620 Quercus lobata
RcHm_v2.0_Chr3g0475141 Rosa chinensis
RcHm_v2.0_Chr5g0047201 Rosa chinensis
Rhsim01G0202600 Rhododendron simsii
Rhsim03G0067700 Rhododendron simsii
Sabra04G0135300 Salix brachista
Sabra04G0135400 Salix brachista
Sabra06G0159000 Salix brachista
Sabra16G0076300 Salix brachista
SalBow3G1900 Salvia bowleyana
SalBow6G1079 Salvia bowleyana
Sc12g0004740 Simmondsia chinensis
Sed0020241 Sechium edule
SEGI_04697 Sequoiadendron giganteum
SEGI_28618 Sequoiadendron giganteum
SGA_v2.0_scaffold177G39452 Striga asiatica
SGA_v2.0_scaffold295G47504 Striga asiatica
SGA_v2.0_scaffold7G03991 Striga asiatica
SMO240G0013 Selaginella moellendorffii
Solyc11g068760.2 Solanum lycopersicum
Sopen11g027470 Solanum pennellii
Sp5g16990 Schrenkiella parvula
Sp6g22960 Schrenkiella parvula
TAR623G0029 Trochodendron aralioides
TAR633G2283 Trochodendron aralioides
TAR636G3190 Trochodendron aralioides
THA.LOC104799557 Tarenaya hassleriana
THA.LOC104810930 Tarenaya hassleriana
THA.LOC104826814 Tarenaya hassleriana
Thecc.05G099700 Theobroma cacao
Thecc.09G277300 Theobroma cacao
Thhalv10010953m.g Eutrema salsugineum
Thhalv10015076m.g Eutrema salsugineum
TPR.G23220 Trifolium pratense
TPR.G26429 Trifolium pratense
TPR.G36105 Trifolium pratense
TPR.G4509 Trifolium pratense
TWI31G1256 Tripterygium wilfordii
TWI74G0792 Tripterygium wilfordii
TWI77G0680 Tripterygium wilfordii
unitig_22.g6156 Utricularia gibba
unitig_8.g2976 Utricularia gibba
vmacro07457 Vaccinium macrocarpon
vmacro14331 Vaccinium macrocarpon
VMungo1080G1056 Vigna mungo
Zm00001eb211110 Zea mays
Zm00001eb242920 Zea mays
Zm00001eb304510 Zea mays

User provided reference genes

Program Settings