Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p30850 Brassica napus
A06p11420 Brassica napus
Aa31LG5G11030 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.2970 Anthoceros agrestis
Actinidia04439 Actinidia chinensis
Actinidia09655 Actinidia chinensis
Actinidia20705 Actinidia chinensis
Actinidia30882 Actinidia chinensis
Ah.03g147470 Amaranthus hybridus
AL3G10220 Arabidopsis lyrata
Aqoxy5G03396 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.415AAL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B2SP7Q Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FH5WCV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JWY1N0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WU8KPG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZHHZ35 Arachis hypogaea
AT3G01910 Arabidopsis thaliana
ATR0561G114 Amborella trichopoda
Atru.chr6.2563 Acer truncatum
Atru.ctg1436.2 Acer truncatum
AUR62003508 Chenopodium quinoa
AUR62017819 Chenopodium quinoa
BcaC03g16939 Brassica carinata
BcaC05g25479 Brassica carinata
BcaC05g25487 Brassica carinata
BNapus_Darmor_BZH_scaffold_229p00130 Brassica napus
BolC2t10871H Brassica oleracea
BolC5t30091H Brassica oleracea
BraA02t08098Z Brassica rapa
BraA06t24320Z Brassica rapa
C02p48410 Brassica napus
C05p13540 Brassica napus
CAN.G473.96 Capsicum annuum
CANSAT64G2942 Cannabis sativa
CARHR075040 Cardamine hirsuta
Carub.0003s0017 Capsella rubella
Ca_04435_v3 Cicer arietinum L.
Ca_26781_v3 Cicer arietinum L.
CBR_g21855 Chara braunii
Cc07_g00790 Coffea canephora
CDE02G1734 Ceratophyllum demersum
CDE05G3065 Ceratophyllum demersum
Cfa007232 Carpinus fangiana
Cfa021214 Carpinus fangiana
Cfa023936 Carpinus fangiana
Ciclev10015526m.g Citrus clementina
CiPaw.03G055000 Carya illinoinensis
ClCG03G002950 Citrullus lanatus
ClCG11G007080 Citrullus lanatus
COL.COLO4_17205 Corchorus olitorius
Cpa.g.sc171.20 Carica papaya
Cre04.g217929 Chlamydomonas reinhardtii
CsaV3_1G013880 Cucumis sativus L.
CsaV3_2G034140 Cucumis sativus L.
CSS0009384 Camellia sinensis var. sinensis
CSS0028620 Camellia sinensis var. sinensis
CSS0031819 Camellia sinensis var. sinensis
CSS0046571 Camellia sinensis var. sinensis
DCAR_021791 Daucus carota
Dinv33342 Davidia involucrata
Dinv33343 Davidia involucrata
Duzib147G0655 Durio zibethinus
Duzib187G0941 Durio zibethinus
ECA238G3019 Erigeron canadensis
EL10Ac6g15361 Beta vulgaris
Eucgr.J02338 Eucalyptus grandis
FAN02G3516 Fragaria x ananassa
FAN05G0052 Fragaria x ananassa
FAN07G1027 Fragaria x ananassa
FAN07G2878 Fragaria x ananassa
FAN11G3558 Fragaria x ananassa
FAN12G1434 Fragaria x ananassa
FAN12G1917 Fragaria x ananassa
FAN14G4384 Fragaria x ananassa
FAN17G0078 Fragaria x ananassa
FAN17G0152 Fragaria x ananassa
FAN17G0241 Fragaria x ananassa
FAN23G1915 Fragaria x ananassa
FAN26G1520 Fragaria x ananassa
FvH4_4g22980 Fragaria vesca
FvH4_4g23890 Fragaria vesca
FvH4_6g53351 Fragaria vesca
FvH4_6g53352 Fragaria vesca
FvH4_6g53430 Fragaria vesca
Glyma.05G078300 Glycine max
Glyma.19G071800 Glycine max
Gohir.A07G227900 Gossypium hirsutum
Gohir.A09G035500 Gossypium hirsutum
Gohir.D07G235000 Gossypium hirsutum
Gohir.D09G036700 Gossypium hirsutum
Gorai.001G270800 Gossypium raimondii
Gorai.006G041700 Gossypium raimondii
GSVIVG01033099001 Vitis vinifera
HanXRQChr07g0198211 Helianthus annuus
HanXRQChr14g0450741 Helianthus annuus
Haze_14869 Corylus avellana
Hma1.2p1_0279F.1_g112713 Hydrangea macrophylla
Hma1.2p1_2636F.1_g325800 Hydrangea macrophylla
Hma1.2p1_2636F.1_g325820 Hydrangea macrophylla
HPP92_007003 Vanilla planifolia
Hund29483 Selenicereus undatus
Hund29484 Selenicereus undatus
Hund30535 Selenicereus undatus
Hund30536 Selenicereus undatus
Lalb_Chr14g0363371 Lupinus albus
Lalb_Chr21g0317451 Lupinus albus
Lj1g0013072 Lotus japonicus
Lj2g0025838 Lotus japonicus
Lj7A608G42 Lonicera japonica
Lsat_1_v5_gn_2_92941 Lactuca sativa
Manes.15G160200 Manihot esculenta
Manes.17G103400 Manihot esculenta
Manes.18G142504 Manihot esculenta
Mapoly0004s0050 Marchantia polymorpha
MBI07_g34622_MAGBIO Magnolia biondii
MD09G1011300 Malus domestica
MD16G1118100 Malus domestica
Medtr0504s0050 Medicago truncatula
Medtr6g023975 Medicago truncatula
Medtr7g033410 Medicago truncatula
MELO3C004917.2 Cucumis melo
MELO3C008194.2 Cucumis melo
Migut.F00068 Erythranthe guttata
Migut.K01461 Erythranthe guttata
MSTRG.24091 Avicennia marina
Nitab4.5_0002050g0110 Nicotiana tabacum
Nitab4.5_0011569g0050 Nicotiana tabacum
Nn3g16489 Nelumbo nucifera
Oeu013941.2 Olea europaea
Oeu035221.1 Olea europaea
Os08g0530400 Oryza sativa ssp. japonica
Os12g0442800 Oryza sativa ssp. japonica
Peaxi162Scf00420g00552 Petunia axillaris
Peaxi162Scf00692g00518 Petunia axillaris
Peaxi162Scf01327g00121 Petunia axillaris
PGR083G0278 Punica granatum
PGSC0003DMG400020212 Solanum tuberosum
Phvul.004G054200 Phaseolus vulgaris
Potri.001G330900 Populus trichocarpa
Pp3c15_16350 Physcomitrium patens
Pp3c1_10390 Physcomitrium patens
Pp3c4_10110 Physcomitrium patens
PRCOL_00000871 Prasinoderma coloniale
Prupe.1G227000 Prunus persica
Prupe.3G305700 Prunus persica
Psat1g086840 Pisum sativum
Psat3g164760 Pisum sativum
PSO017G2867 Papaver somniferum
PSO478G1257 Papaver somniferum
QL02p071550 Quercus lobata
QL03p053648 Quercus lobata
RcHm_v2.0_Chr2g0136551 Rosa chinensis
RcHm_v2.0_Chr2g0175501 Rosa chinensis
RcHm_v2.0_Chr3g0459691 Rosa chinensis
RcHm_v2.0_Chr4g0430531 Rosa chinensis
Rhsim08G0043500 Rhododendron simsii
Rhsim12G0099200 Rhododendron simsii
Sabra16G0211900 Salix brachista
SalBow4G1548 Salvia bowleyana
SalBow7G3637 Salvia bowleyana
Sc03g0006580 Simmondsia chinensis
Sed0021199 Sechium edule
SEGI_06264 Sequoiadendron giganteum
SEGI_30278 Sequoiadendron giganteum
SEGI_32847 Sequoiadendron giganteum
SGA_v2.0_scaffold154G37169 Striga asiatica
SGA_v2.0_scaffold253G45201 Striga asiatica
SMO145G0143 Selaginella moellendorffii
Solyc02g094120.3 Solanum lycopersicum
Sopen02g038740 Solanum pennellii
Sp3g00180 Schrenkiella parvula
TAR374G0357 Trochodendron aralioides
TAR622G1416 Trochodendron aralioides
THA.LOC104821116 Tarenaya hassleriana
Thecc.04G035300 Theobroma cacao
Thhalv10022262m.g Eutrema salsugineum
TPR.G11255 Trifolium pratense
TPR.G16204 Trifolium pratense
TPR.G38353 Trifolium pratense
TWI36G1744 Tripterygium wilfordii
TWI56G0364 Tripterygium wilfordii
unitig_578.g15929 Utricularia gibba
vmacro18339 Vaccinium macrocarpon
vmacro18340 Vaccinium macrocarpon
VMungo0464G0965 Vigna mungo
Zm00001eb036560 Zea mays
Zm00001eb129230 Zea mays

User provided reference genes

Program Settings