Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p27080 Brassica napus
Aa31LG9G12310 Aethionema arabicum
Actinidia15440 Actinidia chinensis
Actinidia17002 Actinidia chinensis
Actinidia28138 Actinidia chinensis
Ah.11g040000 Amaranthus hybridus
AL8G19670 Arabidopsis lyrata
Aqoxy2G03601 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0SP0C0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MX1HG7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TXJ4LD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YQ88M5 Arachis hypogaea
AT5G42150 Arabidopsis thaliana
ATR0180G023 Amborella trichopoda
ATR0626G339 Amborella trichopoda
Atru.chr13.252 Acer truncatum
Atru.chr9.1732 Acer truncatum
AUR62013931 Chenopodium quinoa
AUR62040567 Chenopodium quinoa
BcaB04g19405 Brassica carinata
BcaC03g16480 Brassica carinata
BolC2t10330H Brassica oleracea
BraA02t07726Z Brassica rapa
C02p42910 Brassica napus
CAN.G311.50 Capsicum annuum
CANSAT25G0701 Cannabis sativa
CANSAT80G0515 Cannabis sativa
CARHR284720 Cardamine hirsuta
Carub.0008s0714 Capsella rubella
Ca_15480_v3 Cicer arietinum L.
Ca_25333_v3 Cicer arietinum L.
CBR_g28548 Chara braunii
Cc02_g37150 Coffea canephora
Cc10_g01410 Coffea canephora
CDE05G1955 Ceratophyllum demersum
Cfa013983 Carpinus fangiana
Cfa019655 Carpinus fangiana
Ciclev10001861m.g Citrus clementina
Ciclev10008944m.g Citrus clementina
CiPaw.07G146600 Carya illinoinensis
CiPaw.15G143500 Carya illinoinensis
ClCG06G014280 Citrullus lanatus
ClCG08G014130 Citrullus lanatus
COL.COLO4_26116 Corchorus olitorius
Cpa.g.sc3.395 Carica papaya
Cre07.g319100 Chlamydomonas reinhardtii
CsaV3_1G004390 Cucumis sativus L.
CsaV3_2G024290 Cucumis sativus L.
CSS0013276 Camellia sinensis var. sinensis
CSS0016648 Camellia sinensis var. sinensis
DCAR_003546 Daucus carota
Dinv17550 Davidia involucrata
Dinv39539 Davidia involucrata
Duzib084G0113 Durio zibethinus
Duzib093G0398 Durio zibethinus
ECA238G4543 Erigeron canadensis
EL10Ac1g02157 Beta vulgaris
Eucgr.B01000 Eucalyptus grandis
Eucgr.H00953 Eucalyptus grandis
Eucgr.H00955 Eucalyptus grandis
FAN04G2471 Fragaria x ananassa
FAN07G0700 Fragaria x ananassa
FAN08G3458 Fragaria x ananassa
FAN15G3669 Fragaria x ananassa
FAN18G4023 Fragaria x ananassa
FAN27G0470 Fragaria x ananassa
FvH4_2g38150 Fragaria vesca
FvH4_5g17390 Fragaria vesca
Glyma.04G023200 Glycine max
Glyma.07G102200 Glycine max
Glyma.09G177000 Glycine max
Gohir.A03G092600 Gossypium hirsutum
Gohir.A05G184900 Gossypium hirsutum
Gohir.D02G121200 Gossypium hirsutum
Gohir.D05G187700 Gossypium hirsutum
Gorai.005G133000 Gossypium raimondii
Gorai.009G193000 Gossypium raimondii
GSVIVG01008442001 Vitis vinifera
GSVIVG01009954001 Vitis vinifera
HanXRQChr06g0183781 Helianthus annuus
HanXRQChr07g0204451 Helianthus annuus
HanXRQChr14g0455291 Helianthus annuus
Haze_18855 Corylus avellana
Haze_22668 Corylus avellana
Hma1.2p1_0023F.1_g015660 Hydrangea macrophylla
HPP92_015015 Vanilla planifolia
Hund01671 Selenicereus undatus
Hund05170 Selenicereus undatus
Lalb_Chr08g0246201 Lupinus albus
Lalb_Chr14g0370571 Lupinus albus
Lalb_Chr22g0353551 Lupinus albus
Lalb_Chr22g0353561 Lupinus albus
Lj1g0017366 Lotus japonicus
Lj2g0015525 Lotus japonicus
Lj4A21T62 Lonicera japonica
Lj5A158G70 Lonicera japonica
Lj9A420T36 Lonicera japonica
Lsat_1_v5_gn_2_108180 Lactuca sativa
Lsat_1_v5_gn_2_9140 Lactuca sativa
Lsat_1_v5_gn_6_77041 Lactuca sativa
Lsat_1_v5_gn_8_25101 Lactuca sativa
Lsat_1_v5_gn_8_25221 Lactuca sativa
Manes.14G171500 Manihot esculenta
Manes.18G011100 Manihot esculenta
Mapoly0126s0030 Marchantia polymorpha
MBI04_g06229_MAGBIO Magnolia biondii
MCO10G259 Micromonas commoda
MD08G1010100 Malus domestica
MD14G1236600 Malus domestica
MD15G1010000 Malus domestica
Medtr3g114070 Medicago truncatula
Medtr6g069420 Medicago truncatula
MELO3C011352.2 Cucumis melo
MELO3C017361.2 Cucumis melo
Migut.C00863 Erythranthe guttata
Migut.N03175 Erythranthe guttata
MSTRG.24236 Avicennia marina
Nitab4.5_0006505g0020 Nicotiana tabacum
Nn3g18380 Nelumbo nucifera
Nn4g24400 Nelumbo nucifera
Oeu007366.1 Olea europaea
Oeu010273.1 Olea europaea
Oeu026133.1 Olea europaea
Oeu051168.1 Olea europaea
Os04g0244400 Oryza sativa ssp. japonica
Peaxi162Scf00860g00047 Petunia axillaris
PGR031G0359 Punica granatum
PGR083G0078 Punica granatum
Phvul.004G150900 Phaseolus vulgaris
Phvul.009G009900 Phaseolus vulgaris
Potri.005G242500 Populus trichocarpa
Potri.012G046600 Populus trichocarpa
Potri.015G038300 Populus trichocarpa
Pp3c19_15500 Physcomitrium patens
Pp3c22_13980 Physcomitrium patens
PRCOL_00004876 Prasinoderma coloniale
Prupe.1G007300 Prunus persica
Prupe.1G362400 Prunus persica
Prupe.5G233700 Prunus persica
Psat1g033600 Pisum sativum
Psat5g012880 Pisum sativum
PSO170G1220 Papaver somniferum
PSO541G0876 Papaver somniferum
PSO675G9362 Papaver somniferum
PSO700G0251 Papaver somniferum
QL02p012220 Quercus lobata
QL10p029638 Quercus lobata
RcHm_v2.0_Chr6g0303331 Rosa chinensis
RcHm_v2.0_Chr7g0178351 Rosa chinensis
Rhsim06G0018600 Rhododendron simsii
Sabra05G0187700 Salix brachista
Sabra12G0032700 Salix brachista
Sabra15G0037100 Salix brachista
Sabra15G0037200 Salix brachista
SalBow8G4338 Salvia bowleyana
Sc02g0008690 Simmondsia chinensis
Sc10g0009170 Simmondsia chinensis
Sed0005025 Sechium edule
Sed0021008 Sechium edule
Sed0022788 Sechium edule
SEGI_35058 Sequoiadendron giganteum
SGA_v2.0_scaffold19G08556 Striga asiatica
SGA_v2.0_scaffold25G11209 Striga asiatica
SGA_v2.0_scaffold92G28201 Striga asiatica
SMO140G0111 Selaginella moellendorffii
Solyc04g081740.3 Solanum lycopersicum
Sopen04g035370 Solanum pennellii
Sp7g08670 Schrenkiella parvula
TAR625G0790 Trochodendron aralioides
TAR629G1297 Trochodendron aralioides
THA.LOC104798670 Tarenaya hassleriana
Thecc.03G055800 Theobroma cacao
Thecc.08G048000 Theobroma cacao
Thhalv10027850m.g Eutrema salsugineum
TPR.G20844 Trifolium pratense
TPR.G243 Trifolium pratense
TPR.G38175 Trifolium pratense
TPR.G8619 Trifolium pratense
TWI12G0315 Tripterygium wilfordii
TWI15G0798 Tripterygium wilfordii
TWI60G1662 Tripterygium wilfordii
unitig_748.g7720 Utricularia gibba
vmacro07569 Vaccinium macrocarpon
vmacro17780 Vaccinium macrocarpon
vmacro17781 Vaccinium macrocarpon
VMungo0464G1067 Vigna mungo
VMungo1309G0063 Vigna mungo
VMungo1309G1258 Vigna mungo
VMungo1309G2159 Vigna mungo
Zm00001eb086680 Zea mays

User provided reference genes

Program Settings