Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p12110 Brassica napus
A07p44660 Brassica napus
A08p31400 Brassica napus
A09p61000 Brassica napus
Aa31LG4G1310 Aethionema arabicum
Aa31LG7G710 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.2820 Anthoceros agrestis
Ah.12g055300 Amaranthus hybridus
AL1G28300 Arabidopsis lyrata
AL2G40350 Arabidopsis lyrata
Aqoxy1G01707 Aquilegia oxysepala
Aqoxy5G00706 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.DB50AT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LI0G0T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M9YY7V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T22GZM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XPM13Z Arachis hypogaea
AT1G16170 Arabidopsis thaliana
AT1G79660 Arabidopsis thaliana
ATR0068G040 Amborella trichopoda
ATR0580G444 Amborella trichopoda
Atru.chr1.2819 Acer truncatum
AUR62018676 Chenopodium quinoa
BcaB02g06598 Brassica carinata
BcaB03g13047 Brassica carinata
BcaB03g14503 Brassica carinata
BcaC03g14996 Brassica carinata
BcaC03g17203 Brassica carinata
BcaC05g25604 Brassica carinata
BcaC05g27427 Brassica carinata
BcaC07g38803 Brassica carinata
BcaC08g47524 Brassica carinata
BcaC08g47525 Brassica carinata
BolC2t08604H Brassica oleracea
BolC2t11219H Brassica oleracea
BolC5t30160H Brassica oleracea
BolC6t40365H Brassica oleracea
BolC8t49365H Brassica oleracea
BolC8t51544H Brassica oleracea
BolC8t52006H Brassica oleracea
BraA06t24380Z Brassica rapa
BraA07t30345Z Brassica rapa
BraA07t31975Z Brassica rapa
BraA08t35063Z Brassica rapa
BraA09t41473Z Brassica rapa
C02p25300 Brassica napus
C05p14290 Brassica napus
C06p29730 Brassica napus
C08p17390 Brassica napus
C08p39730 Brassica napus
C08p44600 Brassica napus
CAN.G1008.14 Capsicum annuum
CARHR016650 Cardamine hirsuta
CARHR073400 Cardamine hirsuta
Carub.0001s1593 Capsella rubella
Carub.0002s2654 Capsella rubella
Ca_00210_v3 Cicer arietinum L.
Ca_18450_v3 Cicer arietinum L.
Cc04_g05380 Coffea canephora
Cfa004173 Carpinus fangiana
Ciclev10026842m.g Citrus clementina
CiPaw.01G052100 Carya illinoinensis
ClCG09G003430 Citrullus lanatus
ClCG10G012830 Citrullus lanatus
COL.COLO4_30901 Corchorus olitorius
Cpa.g.sc68.45 Carica papaya
CsaV3_3G032670 Cucumis sativus L.
CsaV3_7G031790 Cucumis sativus L.
CSS0016880 Camellia sinensis var. sinensis
CSS0042010 Camellia sinensis var. sinensis
DCAR_021376 Daucus carota
DCAR_021377 Daucus carota
DCAR_025611 Daucus carota
Dinv21437 Davidia involucrata
Duzib160G0323 Durio zibethinus
Duzib192G0866 Durio zibethinus
Duzib235G1294 Durio zibethinus
ECA232G3259 Erigeron canadensis
ECA246G2284 Erigeron canadensis
ECA247G1662 Erigeron canadensis
EL10Ac5g12047 Beta vulgaris
Eucgr.F03989 Eucalyptus grandis
FAN02G4453 Fragaria x ananassa
Glyma.01G154800 Glycine max
Glyma.07G187000 Glycine max
Glyma.08G062200 Glycine max
Glyma.13G250700 Glycine max
Glyma.15G063700 Glycine max
Glyma.15G176700 Glycine max
Gohir.A06G141700 Gossypium hirsutum
Gohir.A09G076160 Gossypium hirsutum
Gohir.A10G049000 Gossypium hirsutum
Gohir.D06G146000 Gossypium hirsutum
Gohir.D09G076100 Gossypium hirsutum
Gohir.D10G049600 Gossypium hirsutum
Gorai.006G091300 Gossypium raimondii
Gorai.010G170200 Gossypium raimondii
Gorai.011G053100 Gossypium raimondii
GSVIVG01016088001 Vitis vinifera
HanXRQChr04g0100011 Helianthus annuus
HanXRQChr05g0157501 Helianthus annuus
Haze_15237 Corylus avellana
Haze_16413 Corylus avellana
Haze_16416 Corylus avellana
Lalb_Chr09g0327111 Lupinus albus
Lalb_Chr16g0383261 Lupinus albus
Lalb_Chr19g0125611 Lupinus albus
Lalb_Chr20g0122601 Lupinus albus
Lj4g0025384 Lotus japonicus
Lj6g0025627 Lotus japonicus
Lsat_1_v5_gn_4_84900 Lactuca sativa
Lsat_1_v5_gn_5_9061 Lactuca sativa
Manes.04G099000 Manihot esculenta
Manes.11G070600 Manihot esculenta
MBI14_g16433_MAGBIO Magnolia biondii
MBI15_g26076_MAGBIO Magnolia biondii
MD09G1229400 Malus domestica
MD17G1228300 Malus domestica
Medtr2g010880 Medicago truncatula
MELO3C024884.2 Cucumis melo
MELO3C029246.2 Cucumis melo
Migut.D01149 Erythranthe guttata
Migut.I00632 Erythranthe guttata
MSTRG.11218 Avicennia marina
MSTRG.22838 Avicennia marina
MSTRG.9389 Avicennia marina
Nitab4.5_0001591g0180 Nicotiana tabacum
Nitab4.5_0002302g0110 Nicotiana tabacum
Nitab4.5_0002700g0020 Nicotiana tabacum
Nitab4.5_0004781g0020 Nicotiana tabacum
Nitab4.5_0005437g0020 Nicotiana tabacum
Nitab4.5_0005937g0030 Nicotiana tabacum
Nn2g12477 Nelumbo nucifera
Nn8g40130 Nelumbo nucifera
Oeu033454.1 Olea europaea
Oeu051549.1 Olea europaea
Os08g0266200 Oryza sativa ssp. japonica
Peaxi162Scf00195g00118 Petunia axillaris
PGSC0003DMG400014217 Solanum tuberosum
PGSC0003DMG400014438 Solanum tuberosum
Phvul.002G218400 Phaseolus vulgaris
Phvul.006G195900 Phaseolus vulgaris
Potri.001G038200 Populus trichocarpa
Potri.001G038750 Populus trichocarpa
Potri.001G039700 Populus trichocarpa
Potri.001G040300 Populus trichocarpa
Potri.003G186400 Populus trichocarpa
Pp3c10_10840 Physcomitrium patens
Pp3c14_25540 Physcomitrium patens
Prupe.3G105500 Prunus persica
Psat1g210880 Pisum sativum
QL10p043081 Quercus lobata
QL12p003368 Quercus lobata
RcHm_v2.0_Chr2g0131951 Rosa chinensis
Rhsim08G0202400 Rhododendron simsii
Rhsim12G0183300 Rhododendron simsii
Sabra03G0136400 Salix brachista
Sabra03G0136500 Salix brachista
SalBow1G4637 Salvia bowleyana
Sc10g0008460 Simmondsia chinensis
Sed0006875 Sechium edule
Sed0012530 Sechium edule
Sed0021976 Sechium edule
SEGI_37804 Sequoiadendron giganteum
SGA_v2.0_scaffold515G52657 Striga asiatica
SGA_v2.0_scaffold74G24606 Striga asiatica
SHI11349 Sapria himalayana
SMO001G0027 Selaginella moellendorffii
Solyc03g117760.4 Solanum lycopersicum
Solyc12g042540.1 Solanum lycopersicum
Sopen03g036670 Solanum pennellii
Sopen12g021630 Solanum pennellii
Sp1g14410 Schrenkiella parvula
Sp5g34740 Schrenkiella parvula
TAR383G0763 Trochodendron aralioides
THA.LOC104813597 Tarenaya hassleriana
Thecc.06G133700 Theobroma cacao
Thhalv10009201m.g Eutrema salsugineum
Thhalv10019378m.g Eutrema salsugineum
TPR.G13916 Trifolium pratense
TPR.G32634 Trifolium pratense
TWI31G1088 Tripterygium wilfordii
TWI75G1756 Tripterygium wilfordii
unitig_22.g6276 Utricularia gibba
unitig_52.g17030 Utricularia gibba
unitig_8.g3041 Utricularia gibba
vmacro19080 Vaccinium macrocarpon
VMungo0540G1949 Vigna mungo
Zm00001eb177920 Zea mays
Zm00001eb412000 Zea mays

User provided reference genes

Program Settings