Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A09p48590 Brassica napus
Aa31LG5G19840 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.144 Anthoceros agrestis
Actinidia14176 Actinidia chinensis
Actinidia21188 Actinidia chinensis
Ah.04g164950 Amaranthus hybridus
AL1G48760 Arabidopsis lyrata
AL1G62820 Arabidopsis lyrata
AL5G36800 Arabidopsis lyrata
AL6G40520 Arabidopsis lyrata
Aqoxy5G00845 Aquilegia oxysepala
Aqoxy5G03192 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0CTM64 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HDC0J8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PB4QPE Arachis hypogaea
AT1G54110 Arabidopsis thaliana
AT3G55600 Arabidopsis thaliana
ATR0580G077 Amborella trichopoda
Atru.chr1.1670 Acer truncatum
Atru.chr10.1467 Acer truncatum
AUR62015608 Chenopodium quinoa
AUR62029138 Chenopodium quinoa
AUR62029320 Chenopodium quinoa
AUR62035376 Chenopodium quinoa
BcaB01g00076 Brassica carinata
BcaC07g39889 Brassica carinata
BolC8t50716H Brassica oleracea
BolC8t50717H Brassica oleracea
BraA09t40311Z Brassica rapa
C04p36780 Brassica napus
C08p30910 Brassica napus
C08p30920 Brassica napus
CAN.G1497.5 Capsicum annuum
CAN.G675.9 Capsicum annuum
CANSAT01G0027 Cannabis sativa
CARHR058330 Cardamine hirsuta
CARHR165650 Cardamine hirsuta
Carub.0003s3082 Capsella rubella
Ca_21268_v3 Cicer arietinum L.
CBR_g26495 Chara braunii
Cc07_g18270 Coffea canephora
CDE02G1962 Ceratophyllum demersum
CDE06G1796 Ceratophyllum demersum
Cfa013477 Carpinus fangiana
Ciclev10021956m.g Citrus clementina
Ciclev10032601m.g Citrus clementina
CiPaw.07G199700 Carya illinoinensis
CiPaw.08G030900 Carya illinoinensis
ClCG06G013760 Citrullus lanatus
COL.COLO4_13717 Corchorus olitorius
Cpa.g.sc103.74 Carica papaya
Cre16.g678452 Chlamydomonas reinhardtii
CsaV3_3G012080 Cucumis sativus L.
CSS0001594 Camellia sinensis var. sinensis
CSS0006561 Camellia sinensis var. sinensis
CSS0014982 Camellia sinensis var. sinensis
CSS0019003 Camellia sinensis var. sinensis
CSS0030751 Camellia sinensis var. sinensis
CSS0033341 Camellia sinensis var. sinensis
CSS0039493 Camellia sinensis var. sinensis
CSS0041369 Camellia sinensis var. sinensis
DCAR_007335 Daucus carota
Dinv34117 Davidia involucrata
Duzib068G0242 Durio zibethinus
ECA236G3417 Erigeron canadensis
EL10Ac5g11509 Beta vulgaris
Eucgr.F03860 Eucalyptus grandis
FAN02G4054 Fragaria x ananassa
FAN05G2468 Fragaria x ananassa
FAN09G1792 Fragaria x ananassa
FAN09G2125 Fragaria x ananassa
FAN09G2587 Fragaria x ananassa
FAN14G2581 Fragaria x ananassa
FAN15G1423 Fragaria x ananassa
FAN20G0230 Fragaria x ananassa
FAN24G3005 Fragaria x ananassa
FvH4_2g10880 Fragaria vesca
FvH4_6g47540 Fragaria vesca
Glyma.02G282202 Glycine max
Glyma.13G102300 Glycine max
Glyma.14G032100 Glycine max
Glyma.17G056700 Glycine max
Gohir.A10G111600 Gossypium hirsutum
Gohir.D10G156600 Gossypium hirsutum
Gorai.011G174800 Gossypium raimondii
GSVIVG01025934001 Vitis vinifera
GSVIVG01029263001 Vitis vinifera
GSVIVG01033604001 Vitis vinifera
HanXRQChr04g0113781 Helianthus annuus
HanXRQChr10g0281101 Helianthus annuus
Haze_22054 Corylus avellana
Haze_22055 Corylus avellana
Haze_22057 Corylus avellana
Hma1.2p1_0571F.1_g180780 Hydrangea macrophylla
Hma1.2p1_1219F.1_g267880 Hydrangea macrophylla
HPP92_006993 Vanilla planifolia
Hund02205 Selenicereus undatus
Lalb_Chr12g0199721 Lupinus albus
Lj1C63T22 Lonicera japonica
Lj2g0027873 Lotus japonicus
Lj4g0003900 Lotus japonicus
Lsat_1_v5_gn_8_91320 Lactuca sativa
Lsat_1_v5_gn_9_9120 Lactuca sativa
Manes.03G101800 Manihot esculenta
Manes.15G093801 Manihot esculenta
Manes.16G049600 Manihot esculenta
Mapoly0001s0213 Marchantia polymorpha
Mapoly0058s0071 Marchantia polymorpha
MBI14_g31143_MAGBIO Magnolia biondii
MBI16_g09339_MAGBIO Magnolia biondii
MBI16_g31002_MAGBIO Magnolia biondii
MBI16_g41745_MAGBIO Magnolia biondii
MBI18_g46076_MAGBIO Magnolia biondii
MCO03G348 Micromonas commoda
MD08G1104600 Malus domestica
MD13G1238800 Malus domestica
MD16G1244000 Malus domestica
MD16G1244100 Malus domestica
Medtr4g126960 Medicago truncatula
Medtr8g027710 Medicago truncatula
MELO3C006423.2 Cucumis melo
Migut.D00405 Erythranthe guttata
MSTRG.18306 Avicennia marina
MSTRG.21503 Avicennia marina
Nitab4.5_0000630g0070 Nicotiana tabacum
Nitab4.5_0005797g0010 Nicotiana tabacum
Nitab4.5_0010661g0020 Nicotiana tabacum
Nn8g40907 Nelumbo nucifera
Oeu035605.1 Olea europaea
Oeu048106.1 Olea europaea
Os02g0306100 Oryza sativa ssp. japonica
Os08g0533700 Oryza sativa ssp. japonica
Os08g0534350 Oryza sativa ssp. japonica
Os08g0535000 Oryza sativa ssp. japonica
Os09g0272500 Oryza sativa ssp. japonica
Peaxi162Scf00074g00739 Petunia axillaris
Peaxi162Scf00195g00123 Petunia axillaris
Peaxi162Scf00956g00310 Petunia axillaris
PGR142G0083 Punica granatum
PGSC0003DMG400009580 Solanum tuberosum
Phvul.003G138700 Phaseolus vulgaris
Phvul.003G138826 Phaseolus vulgaris
Phvul.003G139226 Phaseolus vulgaris
Potri.018G133700 Populus trichocarpa
Pp3c17_5110 Physcomitrium patens
Prupe.1G071200 Prunus persica
Prupe.2G148000 Prunus persica
Psat1g089640 Pisum sativum
Psat2g189400 Pisum sativum
PSO063G1703 Papaver somniferum
PSO170G1127 Papaver somniferum
PSO170G4544 Papaver somniferum
PSO782G1623 Papaver somniferum
QL02p059634 Quercus lobata
QL03p003406 Quercus lobata
QL03p003697 Quercus lobata
RcHm_v2.0_Chr5g0056791 Rosa chinensis
RcHm_v2.0_Chr6g0268981 Rosa chinensis
Rhsim01G0049400 Rhododendron simsii
Rhsim01G0266500 Rhododendron simsii
Rhsim08G0153900 Rhododendron simsii
Sabra18G0113300 Salix brachista
SalBow4G0244 Salvia bowleyana
Sc03g0009620 Simmondsia chinensis
Sed0017744 Sechium edule
Sed0025908 Sechium edule
SEGI_30783 Sequoiadendron giganteum
SEGI_34697 Sequoiadendron giganteum
SGA_v2.0_scaffold10G05150 Striga asiatica
SMO288G0003 Selaginella moellendorffii
SMO352G0089 Selaginella moellendorffii
Solyc02g062120.3 Solanum lycopersicum
Solyc02g069380.3 Solanum lycopersicum
Sopen02g013070 Solanum pennellii
Sopen02g018530 Solanum pennellii
Sp1g35080 Schrenkiella parvula
Sp5g06880 Schrenkiella parvula
THA.LOC104810051 Tarenaya hassleriana
THA.LOC104810053 Tarenaya hassleriana
Thecc.09G252700 Theobroma cacao
Thecc.10G141700 Theobroma cacao
Thhalv10010672m.g Eutrema salsugineum
Thhalv10011761m.g Eutrema salsugineum
TPR.G16420 Trifolium pratense
TPR.G5405 Trifolium pratense
TWI39G0804 Tripterygium wilfordii
unitig_22.g5286 Utricularia gibba
vmacro03823 Vaccinium macrocarpon
VMungo1215G1259 Vigna mungo
Zm00001eb036800 Zea mays
Zm00001eb252050 Zea mays

User provided reference genes

Program Settings