Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p34760 Brassica napus
A05p41400 Brassica napus
Aa31LG1G28630 Aethionema arabicum
Aa31LG5G17130 Aethionema arabicum
Aa31LG5G17210 Aethionema arabicum
Actinidia20984 Actinidia chinensis
Ah.02g112380 Amaranthus hybridus
Ah.11g049180 Amaranthus hybridus
AL3G17720 Arabidopsis lyrata
AL3G17730 Arabidopsis lyrata
AL4G46880 Arabidopsis lyrata
Aqoxy2G02729 Aquilegia oxysepala
Aqoxy2G02731 Aquilegia oxysepala
Aqoxy6G02869 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1G30EX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R42YS1 Arachis hypogaea
AT2G47320 Arabidopsis thaliana
AT3G66652 Arabidopsis thaliana
AT3G66654 Arabidopsis thaliana
ATR0691G030 Amborella trichopoda
Atru.chr4.3009 Acer truncatum
Atru.chr5.976 Acer truncatum
AUR62011781 Chenopodium quinoa
AUR62024625 Chenopodium quinoa
BcaC01g05036 Brassica carinata
BolC3t16504H Brassica oleracea
BolC5t34719H Brassica oleracea
BraA03t11807Z Brassica rapa
BraA03t12657Z Brassica rapa
BraA05t22861Z Brassica rapa
C03p42300 Brassica napus
C03p42310 Brassica napus
C05p60620 Brassica napus
CAN.G1180.4 Capsicum annuum
CAN.G205.27 Capsicum annuum
CAN.G488.22 Capsicum annuum
CAN.G8553.1 Capsicum annuum
CAN.G900.9 Capsicum annuum
CANSAT78G1251 Cannabis sativa
CARHR081190 Cardamine hirsuta
CARHR081200 Cardamine hirsuta
CARHR142710 Cardamine hirsuta
Carub.0003s0612 Capsella rubella
Carub.0003s0613 Capsella rubella
Carub.0004s3004 Capsella rubella
Ca_10532_v3 Cicer arietinum L.
Ca_12508_v3 Cicer arietinum L.
Cc01_g21560 Coffea canephora
CDE06G1276 Ceratophyllum demersum
CDE07G1120 Ceratophyllum demersum
Ciclev10006429m.g Citrus clementina
Ciclev10022021m.g Citrus clementina
Ciclev10024565m.g Citrus clementina
CiPaw.07G118800 Carya illinoinensis
CiPaw.08G088400 Carya illinoinensis
ClCG09G005010 Citrullus lanatus
COL.COLO4_23215 Corchorus olitorius
COL.COLO4_34623 Corchorus olitorius
Cpa.g.sc18.66 Carica papaya
Cpa.g.sc9.64 Carica papaya
CsaV3_7G030050 Cucumis sativus L.
CSS0014331 Camellia sinensis var. sinensis
CSS0016194 Camellia sinensis var. sinensis
CSS0032622 Camellia sinensis var. sinensis
CSS0035267 Camellia sinensis var. sinensis
CSS0040819 Camellia sinensis var. sinensis
DCAR_005747 Daucus carota
DCAR_018287 Daucus carota
Dinv15182 Davidia involucrata
Dinv44290 Davidia involucrata
Duzib133G1208 Durio zibethinus
Duzib138G1299 Durio zibethinus
Duzib151G0031 Durio zibethinus
Duzib212G0392 Durio zibethinus
ECA236G2523 Erigeron canadensis
EL10As5g23551 Beta vulgaris
Eucgr.A00375 Eucalyptus grandis
FAN07G1111 Fragaria x ananassa
FAN12G4250 Fragaria x ananassa
FvH4_4g19630 Fragaria vesca
Glyma.07G157800 Glycine max
Glyma.10G206100 Glycine max
Glyma.20G005600 Glycine max
Glyma.20G184400 Glycine max
Gohir.A02G054200 Gossypium hirsutum
Gohir.A08G040200 Gossypium hirsutum
Gohir.A11G108500 Gossypium hirsutum
Gohir.D02G059200 Gossypium hirsutum
Gohir.D08G050300 Gossypium hirsutum
Gohir.D11G113000 Gossypium hirsutum
Gohir.D12G143500 Gossypium hirsutum
Gorai.004G049900 Gossypium raimondii
Gorai.005G066800 Gossypium raimondii
Gorai.007G121500 Gossypium raimondii
Gorai.008G154800 Gossypium raimondii
GSVIVG01035000001 Vitis vinifera
HanXRQChr04g0106201 Helianthus annuus
HanXRQChr06g0168111 Helianthus annuus
Hma1.2p1_0013F.1_g008600 Hydrangea macrophylla
Hma1.2p1_0013F.1_g008610 Hydrangea macrophylla
Hma1.2p1_0408F.1_g146580 Hydrangea macrophylla
HPP92_012337 Vanilla planifolia
HPP92_012376 Vanilla planifolia
HPP92_014101 Vanilla planifolia
Hund09644 Selenicereus undatus
Lalb_Chr02g0151921 Lupinus albus
Lalb_Chr21g0313411 Lupinus albus
Lj2A1207T69 Lonicera japonica
Lj5g0026968 Lotus japonicus
Lsat_1_v5_gn_8_166900 Lactuca sativa
Manes.01G229100 Manihot esculenta
Manes.03G204400 Manihot esculenta
Manes.15G004701 Manihot esculenta
MBI16_g29820_MAGBIO Magnolia biondii
MD13G1155100 Malus domestica
MD16G1154600 Malus domestica
Medtr1g035360 Medicago truncatula
Medtr1g094065 Medicago truncatula
MELO3C015916.2 Cucumis melo
Migut.D00072 Erythranthe guttata
MSTRG.18092 Avicennia marina
MSTRG.21696 Avicennia marina
Nitab4.5_0000063g0190 Nicotiana tabacum
Nitab4.5_0002626g0040 Nicotiana tabacum
Nitab4.5_0004195g0070 Nicotiana tabacum
Nitab4.5_0005019g0020 Nicotiana tabacum
Nn3g21722 Nelumbo nucifera
Nn4g25573 Nelumbo nucifera
Oeu008478.1 Olea europaea
Oeu038032.1 Olea europaea
Oeu043736.1 Olea europaea
Oeu049917.2 Olea europaea
Os07g0476500 Oryza sativa ssp. japonica
Peaxi162Scf00311g01419 Petunia axillaris
Peaxi162Scf00722g00412 Petunia axillaris
PGR004G2805 Punica granatum
PGR031G0406 Punica granatum
PGSC0003DMG400003896 Solanum tuberosum
PGSC0003DMG400028285 Solanum tuberosum
Phvul.003G007900 Phaseolus vulgaris
Phvul.007G100400 Phaseolus vulgaris
Potri.002G194250 Populus trichocarpa
Potri.008G105800 Populus trichocarpa
Potri.010G144500 Populus trichocarpa
Potri.014G118800 Populus trichocarpa
Prupe.1G118100 Prunus persica
Psat6g097720 Pisum sativum
Psat6g180760 Pisum sativum
PSO170G4786 Papaver somniferum
PSO357G0466 Papaver somniferum
QL06p011940 Quercus lobata
QL12p019486 Quercus lobata
RcHm_v2.0_Chr4g0424891 Rosa chinensis
Rhsim01G0291800 Rhododendron simsii
Rhsim13G0004100 Rhododendron simsii
Sabra08G0079800 Salix brachista
Sabra10G0111600 Salix brachista
SalBow3G0973 Salvia bowleyana
Sc17g0000400 Simmondsia chinensis
Sc24g0004210 Simmondsia chinensis
Sed0014188 Sechium edule
Sed0018248 Sechium edule
SEGI_20205 Sequoiadendron giganteum
SEGI_21652 Sequoiadendron giganteum
SGA_v2.0_scaffold334G49078 Striga asiatica
Solyc09g008410.3 Solanum lycopersicum
Solyc10g083930.2 Solanum lycopersicum
Sopen09g003230 Solanum pennellii
Sopen10g033380 Solanum pennellii
Sp3g05600 Schrenkiella parvula
Sp3g05610 Schrenkiella parvula
Sp4g29270 Schrenkiella parvula
TAR365G0306 Trochodendron aralioides
TAR636G0526 Trochodendron aralioides
THA.LOC104805013 Tarenaya hassleriana
THA.LOC104817453 Tarenaya hassleriana
THA.LOC104818884 Tarenaya hassleriana
THA.LOC104827097 Tarenaya hassleriana
Thecc.01G315300 Theobroma cacao
Thecc.04G299800 Theobroma cacao
Thhalv10001616m.g Eutrema salsugineum
Thhalv10019983m.g Eutrema salsugineum
Thhalv10021435m.g Eutrema salsugineum
TPR.G33035 Trifolium pratense
TPR.G9810 Trifolium pratense
TWI36G1456 Tripterygium wilfordii
TWI53G0439 Tripterygium wilfordii
TWI73G0752 Tripterygium wilfordii
vmacro02394 Vaccinium macrocarpon
vmacro02499 Vaccinium macrocarpon
VMungo0720G0534 Vigna mungo
VMungo1215G1218 Vigna mungo
Zm00001eb319930 Zea mays

User provided reference genes

Program Settings