Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p03970 Brassica napus
A03p62940 Brassica napus
A08p16780 Brassica napus
Aa31LG2G16030 Aethionema arabicum
Aa31LG8G13620 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.2699 Anthoceros agrestis
Actinidia00521 Actinidia chinensis
Actinidia08229 Actinidia chinensis
Actinidia17817 Actinidia chinensis
Actinidia27897 Actinidia chinensis
Actinidia27898 Actinidia chinensis
Ah.01g019420 Amaranthus hybridus
AL7G16740 Arabidopsis lyrata
Aqoxy5G01649 Aquilegia oxysepala
Aqoxy6G01092 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.19SFKA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.92AS0N Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PLG8VX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WSY56D Arachis hypogaea
AT4G34490 Arabidopsis thaliana
ATR0733G133 Amborella trichopoda
Atru.chr5.3008 Acer truncatum
Atru.chr7.1490 Acer truncatum
AUR62011328 Chenopodium quinoa
AUR62016732 Chenopodium quinoa
BcaB03g11830 Brassica carinata
BcaC01g00903 Brassica carinata
BcaNung06262 Brassica carinata
BolC1t00417H Brassica oleracea
BolC3t20862H Brassica oleracea
BolC7t46490H Brassica oleracea
BraA01t00384Z Brassica rapa
BraA03t15369Z Brassica rapa
BraA08t33643Z Brassica rapa
C01p04280 Brassica napus
C03p85740 Brassica napus
C07p60610 Brassica napus
CAN.G1.44 Capsicum annuum
CAN.G1412.2 Capsicum annuum
CANSAT01G0222 Cannabis sativa
CARHR242770 Cardamine hirsuta
Carub.0007s0581 Capsella rubella
Ca_20867_v3 Cicer arietinum L.
CBR_g21060 Chara braunii
Cc02_g17610 Coffea canephora
CDE07G1879 Ceratophyllum demersum
Cfa005008 Carpinus fangiana
Cfa027286 Carpinus fangiana
Ciclev10028340m.g Citrus clementina
CiPaw.05G064000 Carya illinoinensis
CiPaw.06G135700 Carya illinoinensis
ClCG02G005050 Citrullus lanatus
ClCG11G004450 Citrullus lanatus
COL.COLO4_25923 Corchorus olitorius
Cpa.g.sc62.144 Carica papaya
Cre06.g304100 Chlamydomonas reinhardtii
CsaV3_2G014670 Cucumis sativus L.
CsaV3_7G023520 Cucumis sativus L.
CSS0001193 Camellia sinensis var. sinensis
CSS0028225 Camellia sinensis var. sinensis
CSS0031831 Camellia sinensis var. sinensis
DCAR_022933 Daucus carota
DCAR_028988 Daucus carota
Dinv23526 Davidia involucrata
Dinv42068 Davidia involucrata
Duzib052G0238 Durio zibethinus
Duzib132G0954 Durio zibethinus
Duzib248G1434 Durio zibethinus
ECA234G0118 Erigeron canadensis
ECA234G4333 Erigeron canadensis
ECA236G3498 Erigeron canadensis
EL10Ac9g21728 Beta vulgaris
Eucgr.I01265 Eucalyptus grandis
FAN15G1113 Fragaria x ananassa
FAN20G1110 Fragaria x ananassa
FAN24G2203 Fragaria x ananassa
FAN27G1229 Fragaria x ananassa
FvH4_2g08710 Fragaria vesca
Glyma.11G118300 Glycine max
Glyma.12G043700 Glycine max
Gohir.A03G194200 Gossypium hirsutum
Gohir.A13G034600 Gossypium hirsutum
Gohir.D02G215300 Gossypium hirsutum
Gohir.D13G033000 Gossypium hirsutum
Gorai.005G243200 Gossypium raimondii
Gorai.013G037400 Gossypium raimondii
GSVIVG01031961001 Vitis vinifera
HanXRQChr04g0127991 Helianthus annuus
HanXRQChr10g0307161 Helianthus annuus
HanXRQChr13g0410301 Helianthus annuus
HanXRQChr16g0505731 Helianthus annuus
Haze_02380 Corylus avellana
HPP92_017152 Vanilla planifolia
HPP92_017451 Vanilla planifolia
Hund06230 Selenicereus undatus
Lalb_Chr08g0246641 Lupinus albus
Lalb_Chr23g0265401 Lupinus albus
Lj1g0027431 Lotus japonicus
Lj5A197T61 Lonicera japonica
Lj9A369G67 Lonicera japonica
Lsat_1_v5_gn_5_118620 Lactuca sativa
Lsat_1_v5_gn_7_89340 Lactuca sativa
Manes.02G225801 Manihot esculenta
Manes.08G077055 Manihot esculenta
Manes.15G163700 Manihot esculenta
Manes.17G100700 Manihot esculenta
Mapoly0074s0004 Marchantia polymorpha
MBI16_g36558_MAGBIO Magnolia biondii
MBI16_g38644_MAGBIO Magnolia biondii
MBI16_g46919_MAGBIO Magnolia biondii
MBI16_g46920_MAGBIO Magnolia biondii
MBI19_g07191_MAGBIO Magnolia biondii
MCO10G181 Micromonas commoda
MD05G1067200 Malus domestica
MD10G1076900 Malus domestica
MD10G1122300 Malus domestica
Medtr4g069960 Medicago truncatula
MELO3C012526.2 Cucumis melo
MELO3C014785.2 Cucumis melo
MELO3C019736.2 Cucumis melo
MELO3C020978.2 Cucumis melo
MELO3C034852.2 Cucumis melo
Migut.B00240 Erythranthe guttata
Migut.N01237 Erythranthe guttata
MSTRG.20085 Avicennia marina
Nitab4.5_0000308g0040 Nicotiana tabacum
Nitab4.5_0001361g0240 Nicotiana tabacum
Nitab4.5_0004172g0090 Nicotiana tabacum
Nitab4.5_0005152g0050 Nicotiana tabacum
Nn1g05019 Nelumbo nucifera
Nn2g12769 Nelumbo nucifera
Nn2g12770 Nelumbo nucifera
Nn5g29579 Nelumbo nucifera
Oeu003718.1 Olea europaea
Oeu020764.1 Olea europaea
Oeu029126.1 Olea europaea
Os03g0722600 Oryza sativa ssp. japonica
Os08g0447900 Oryza sativa ssp. japonica
Peaxi162Scf00003g01338 Petunia axillaris
Peaxi162Scf00016g00826 Petunia axillaris
PGR142G1190 Punica granatum
PGSC0003DMG400000723 Solanum tuberosum
PGSC0003DMG400033911 Solanum tuberosum
Phvul.011G045700 Phaseolus vulgaris
Potri.004G153900 Populus trichocarpa
Potri.009G115500 Populus trichocarpa
Pp3c4_1720 Physcomitrium patens
PRCOL_00002324 Prasinoderma coloniale
Prupe.8G097900 Prunus persica
Psat7g184520 Pisum sativum
PSO210G1867 Papaver somniferum
PSO541G1852 Papaver somniferum
PSO675G1462 Papaver somniferum
PSO731G0006 Papaver somniferum
QL11p043469 Quercus lobata
RcHm_v2.0_Chr6g0264151 Rosa chinensis
Rhsim05G0074500 Rhododendron simsii
Sabra04G0102300 Salix brachista
Sabra09G0088700 Salix brachista
SalBow6G0296 Salvia bowleyana
SalBow6G6569 Salvia bowleyana
Sc18g0004490 Simmondsia chinensis
Sed0019550 Sechium edule
Sed0023087 Sechium edule
Sed0027089 Sechium edule
SEGI_09930 Sequoiadendron giganteum
SGA_v2.0_scaffold58G20536 Striga asiatica
SMO174G0095 Selaginella moellendorffii
Solyc01g109580.4 Solanum lycopersicum
Solyc10g051340.2 Solanum lycopersicum
Sopen01g051770 Solanum pennellii
Sopen10g023030 Solanum pennellii
Sp7g32280 Schrenkiella parvula
TAR376G0071 Trochodendron aralioides
TAR381G1436 Trochodendron aralioides
TAR628G1296 Trochodendron aralioides
THA.LOC104807320 Tarenaya hassleriana
THA.LOC104819606 Tarenaya hassleriana
Thecc.02G086000 Theobroma cacao
Thhalv10025082m.g Eutrema salsugineum
TPR.G14489 Trifolium pratense
TPR.G31061 Trifolium pratense
TPR.G333 Trifolium pratense
TWI31G1364 Tripterygium wilfordii
TWI79G1197 Tripterygium wilfordii
unitig_22.g5174 Utricularia gibba
unitig_8.g3568 Utricularia gibba
vmacro02112 Vaccinium macrocarpon
vmacro17495 Vaccinium macrocarpon
VMungo1127G1959 Vigna mungo
Zm00001eb040800 Zea mays
Zm00001eb055650 Zea mays
Zm00001eb215890 Zea mays

User provided reference genes

Program Settings