Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p02800 Brassica napus
A09p50720 Brassica napus
Aa31LG10G12570 Aethionema arabicum
Aa31LG1G24010 Aethionema arabicum
Actinidia09377 Actinidia chinensis
Actinidia17255 Actinidia chinensis
Actinidia20299 Actinidia chinensis
Actinidia38570 Actinidia chinensis
Ah.13g073290 Amaranthus hybridus
AL4G40620 Arabidopsis lyrata
AL5G39520 Arabidopsis lyrata
Aqoxy2G00088 Aquilegia oxysepala
Aqoxy2G00107 Aquilegia oxysepala
Aqoxy2G00125 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.E4BIS3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P0WGR4 Arachis hypogaea
AT2G42260 Arabidopsis thaliana
AT3G57860 Arabidopsis thaliana
Atru.chr1.937 Acer truncatum
AUR62002437 Chenopodium quinoa
AUR62008542 Chenopodium quinoa
AUR62021551 Chenopodium quinoa
AUR62023750 Chenopodium quinoa
BcaC01g05380 Brassica carinata
BcaC02g12471 Brassica carinata
BcaC07g40160 Brassica carinata
BcaC07g40221 Brassica carinata
BcaC07g40334 Brassica carinata
BcaNung04400 Brassica carinata
BcaNung05887 Brassica carinata
BolC3t15100H Brassica oleracea
BolC4t21976H Brassica oleracea
BolC7t41959H Brassica oleracea
BraA05t19272Z Brassica rapa
BraA07t28705Z Brassica rapa
C03p27180 Brassica napus
C03p27190 Brassica napus
C04p03390 Brassica napus
C04p28740 Brassica napus
C04p28750 Brassica napus
C07p14610 Brassica napus
C08p33430 Brassica napus
C09p47700 Brassica napus
CAN.G128.30 Capsicum annuum
CANSAT80G0280 Cannabis sativa
CANSAT80G2578 Cannabis sativa
CARHR137300 Cardamine hirsuta
CARHR168170 Cardamine hirsuta
Carub.0004s2460 Capsella rubella
Carub.0005s2470 Capsella rubella
Ca_08494_v3 Cicer arietinum L.
Cc06_g16370 Coffea canephora
CDE05G1889 Ceratophyllum demersum
Cfa016885 Carpinus fangiana
Cfa020096 Carpinus fangiana
Ciclev10005700m.g Citrus clementina
CiPaw.09G033400 Carya illinoinensis
CiPaw.10G029000 Carya illinoinensis
ClCG04G000340 Citrullus lanatus
COL.COLO4_28742 Corchorus olitorius
Cpa.g.sc85.97 Carica papaya
Cpa.g.sc85.98 Carica papaya
CsaV3_4G010540 Cucumis sativus L.
CSS0007658 Camellia sinensis var. sinensis
CSS0008617 Camellia sinensis var. sinensis
CSS0013310 Camellia sinensis var. sinensis
CSS0023140 Camellia sinensis var. sinensis
CSS0045770 Camellia sinensis var. sinensis
DCAR_020468 Daucus carota
DCAR_024103 Daucus carota
DCAR_024104 Daucus carota
Dinv18112 Davidia involucrata
Dinv24108 Davidia involucrata
Duzib106G0586 Durio zibethinus
Duzib128G0723 Durio zibethinus
ECA234G0160 Erigeron canadensis
ECA248G0895 Erigeron canadensis
ECA248G2321 Erigeron canadensis
EL10Ac3g06131 Beta vulgaris
EL10Ac5g11139 Beta vulgaris
Eucgr.A02419 Eucalyptus grandis
FAN02G2343 Fragaria x ananassa
FAN05G1437 Fragaria x ananassa
FAN05G3047 Fragaria x ananassa
FAN05G4212 Fragaria x ananassa
FAN09G1919 Fragaria x ananassa
FAN14G4545 Fragaria x ananassa
FAN18G3548 Fragaria x ananassa
FAN19G1882 Fragaria x ananassa
FAN23G1753 Fragaria x ananassa
FAN23G2494 Fragaria x ananassa
FAN26G0276 Fragaria x ananassa
FAN26G0411 Fragaria x ananassa
FvH4_1g24920 Fragaria vesca
FvH4_3g36584 Fragaria vesca
FvH4_6g18600 Fragaria vesca
Glyma.03G141800 Glycine max
Glyma.11G153400 Glycine max
Glyma.19G144400 Glycine max
Gohir.A11G313900 Gossypium hirsutum
Gohir.D11G331100 Gossypium hirsutum
Gorai.007G361800 Gossypium raimondii
GSVIVG01033358001 Vitis vinifera
HanXRQChr05g0132771 Helianthus annuus
HanXRQChr06g0172301 Helianthus annuus
HanXRQChr06g0176361 Helianthus annuus
HanXRQChr15g0483571 Helianthus annuus
Haze_19934 Corylus avellana
Haze_20095 Corylus avellana
Hma1.2p1_0174F.1_g077040 Hydrangea macrophylla
Hma1.2p1_0640F.1_g194090 Hydrangea macrophylla
Hund02580 Selenicereus undatus
Hund02581 Selenicereus undatus
Hund02582 Selenicereus undatus
Lalb_Chr15g0078851 Lupinus albus
Lalb_Chr18g0047601 Lupinus albus
Lj1g0016608 Lotus japonicus
Lju124A33T34 Lonicera japonica
Lsat_1_v5_gn_8_79401 Lactuca sativa
Manes.03G008800 Manihot esculenta
Manes.16G129700 Manihot esculenta
MBI01_g36437_MAGBIO Magnolia biondii
MD12G1062400 Malus domestica
MD14G1063100 Malus domestica
Medtr7g092570 Medicago truncatula
MELO3C023180.2 Cucumis melo
Migut.J01803 Erythranthe guttata
Migut.K00058 Erythranthe guttata
MSTRG.10833 Avicennia marina
MSTRG.26098 Avicennia marina
Nitab4.5_0000016g0070 Nicotiana tabacum
Nitab4.5_0004063g0080 Nicotiana tabacum
Nitab4.5_0006853g0010 Nicotiana tabacum
Nitab4.5_0010571g0010 Nicotiana tabacum
Nn1g03337 Nelumbo nucifera
Nn2g15511 Nelumbo nucifera
Oeu033755.1 Olea europaea
Os04g0472700 Oryza sativa ssp. japonica
Peaxi162Scf00258g00220 Petunia axillaris
Peaxi162Scf00285g00427 Petunia axillaris
Peaxi162Scf00406g00711 Petunia axillaris
PGR004G1207 Punica granatum
PGR031G2261 Punica granatum
PGR031G3517 Punica granatum
PGSC0003DMG402023713 Solanum tuberosum
Phvul.001G138700 Phaseolus vulgaris
Phvul.008G153400 Phaseolus vulgaris
Phvul.011G101601 Phaseolus vulgaris
Potri.006G057800 Populus trichocarpa
Potri.016G050300 Populus trichocarpa
Prupe.7G071700 Prunus persica
Psat3g070200 Pisum sativum
PSO339G6426 Papaver somniferum
PSO384G2274 Papaver somniferum
PSO541G0601 Papaver somniferum
PSO675G0055 Papaver somniferum
QL07p023657 Quercus lobata
QL07p023685 Quercus lobata
RcHm_v2.0_Chr3g0473161 Rosa chinensis
RcHm_v2.0_Chr3g0473181 Rosa chinensis
RcHm_v2.0_Chr7g0219161 Rosa chinensis
Rhsim04G0098700 Rhododendron simsii
Sabra06G0041000 Salix brachista
Sabra16G0053800 Salix brachista
SalBow1G6809 Salvia bowleyana
SalBow1G6855 Salvia bowleyana
SalBow6G1355 Salvia bowleyana
Sc19g0006890 Simmondsia chinensis
Sed0010654 Sechium edule
Sed0025913 Sechium edule
SGA_v2.0_scaffold105G30470 Striga asiatica
SGA_v2.0_scaffold69G23080 Striga asiatica
SHI33674 Sapria himalayana
Solyc10g080400.2 Solanum lycopersicum
Sopen10g030940 Solanum pennellii
Sp4g24440 Schrenkiella parvula
Sp5g04860 Schrenkiella parvula
TAR369G0624 Trochodendron aralioides
TAR629G0409 Trochodendron aralioides
TAR629G2270 Trochodendron aralioides
THA.LOC104802399 Tarenaya hassleriana
THA.LOC104824461 Tarenaya hassleriana
Thecc.05G166300 Theobroma cacao
Thecc.06G029500 Theobroma cacao
Thhalv10006194m.g Eutrema salsugineum
Thhalv10017150m.g Eutrema salsugineum
TPR.G4785 Trifolium pratense
TWI53G0899 Tripterygium wilfordii
TWI74G1092 Tripterygium wilfordii
unitig_26.g8909 Utricularia gibba
unitig_749.g14030 Utricularia gibba
vmacro09100 Vaccinium macrocarpon
VMungo1383G2219 Vigna mungo
Zm00001eb079910 Zea mays

User provided reference genes

Program Settings