Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p05870 Brassica napus
A03p61470 Brassica napus
A08p18150 Brassica napus
Aa31LG10G10670 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.4191 Anthoceros agrestis
Actinidia13267 Actinidia chinensis
Actinidia14629 Actinidia chinensis
Actinidia15699 Actinidia chinensis
Ah.12g063740 Amaranthus hybridus
AL4G17080 Arabidopsis lyrata
AL7G19280 Arabidopsis lyrata
Aqoxy7G01963 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.ED147J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IM4PDC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MW4ZUP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VD8BDW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y9DYXP Arachis hypogaea
AT2G25610 Arabidopsis thaliana
AT4G32530 Arabidopsis thaliana
ATR0083G021 Amborella trichopoda
Atru.chr7.2353 Acer truncatum
AUR62032356 Chenopodium quinoa
AUR62041851 Chenopodium quinoa
BcaB03g12749 Brassica carinata
BcaC01g01019 Brassica carinata
BcaC09g52042 Brassica carinata
BcaNung04516 Brassica carinata
BolC1t00643H Brassica oleracea
BolC3t21031H Brassica oleracea
BraA01t00554Z Brassica rapa
BraA03t15192Z Brassica rapa
BraA08t33768Z Brassica rapa
C01p06490 Brassica napus
C03p87310 Brassica napus
C07p59250 Brassica napus
CAN.G211.2 Capsicum annuum
CAN.G395.36 Capsicum annuum
CANSAT54G2758 Cannabis sativa
CARHR240460 Cardamine hirsuta
Carub.0004s0534 Capsella rubella
Carub.0007s0805 Capsella rubella
Ca_12922_v3 Cicer arietinum L.
CBR_g48556 Chara braunii
Cc04_g03810 Coffea canephora
CDE01G0121 Ceratophyllum demersum
CDE02G0717 Ceratophyllum demersum
Cfa013196 Carpinus fangiana
Ciclev10009643m.g Citrus clementina
CiPaw.07G219300 Carya illinoinensis
CiPaw.08G014200 Carya illinoinensis
ClCG05G017160 Citrullus lanatus
ClCG08G013010 Citrullus lanatus
COL.COLO4_24008 Corchorus olitorius
Cpa.g.sc603.4 Carica papaya
Cpa.g.sc91.29 Carica papaya
Cre12.g529100 Chlamydomonas reinhardtii
CsaV3_2G031740 Cucumis sativus L.
CsaV3_3G046610 Cucumis sativus L.
CSS0000681 Camellia sinensis var. sinensis
CSS0016532 Camellia sinensis var. sinensis
CSS0031636 Camellia sinensis var. sinensis
CSS0040958 Camellia sinensis var. sinensis
DCAR_003045 Daucus carota
DCAR_006243 Daucus carota
Dinv11598 Davidia involucrata
Dinv38078 Davidia involucrata
Duzib150G0462 Durio zibethinus
Duzib168G0366 Durio zibethinus
ECA232G3542 Erigeron canadensis
ECA233G0626 Erigeron canadensis
EL10Ac2g02561 Beta vulgaris
EL10As1g23116 Beta vulgaris
Eucgr.C02831 Eucalyptus grandis
FAN15G2480 Fragaria x ananassa
FAN24G1679 Fragaria x ananassa
FAN27G2386 Fragaria x ananassa
FvH4_2g29800 Fragaria vesca
Glyma.14G127600 Glycine max
Glyma.17G206600 Glycine max
Gohir.A02G109706 Gossypium hirsutum
Gohir.A08G091800 Gossypium hirsutum
Gohir.D03G064500 Gossypium hirsutum
Gohir.D08G107100 Gossypium hirsutum
Gorai.004G114500 Gossypium raimondii
Gorai.013G110300 Gossypium raimondii
GSVIVG01014559001 Vitis vinifera
GSVIVG01017212001 Vitis vinifera
GSVIVG01035775001 Vitis vinifera
GSVIVG01036835001 Vitis vinifera
GSVIVG01038372001 Vitis vinifera
HanXRQChr02g0050661 Helianthus annuus
HanXRQChr03g0081341 Helianthus annuus
HanXRQChr13g0402461 Helianthus annuus
Haze_21598 Corylus avellana
Haze_27614 Corylus avellana
Hma1.2p1_0000F.1_g001030 Hydrangea macrophylla
Hma1.2p1_0007F.1_g005180 Hydrangea macrophylla
HPP92_003632 Vanilla planifolia
HPP92_003644 Vanilla planifolia
Hund25698 Selenicereus undatus
Lalb_Chr14g0361951 Lupinus albus
Lalb_Chr24g0402261 Lupinus albus
Lalb_Chr24g0402271 Lupinus albus
Lj5A66T58 Lonicera japonica
Lj5g0005859 Lotus japonicus
Lj9A504T65 Lonicera japonica
Lsat_1_v5_gn_4_104721 Lactuca sativa
Lsat_1_v5_gn_6_21641 Lactuca sativa
Manes.03G018400 Manihot esculenta
Manes.16G118100 Manihot esculenta
Mapoly0016s0012 Marchantia polymorpha
MBI04_g33817_MAGBIO Magnolia biondii
MCO05G406 Micromonas commoda
MD08G1141700 Malus domestica
MD15G1118200 Malus domestica
Medtr4g010220 Medicago truncatula
Medtr7g090330 Medicago truncatula
MELO3C003677.2 Cucumis melo
MELO3C011225.2 Cucumis melo
Migut.I00813 Erythranthe guttata
MSTRG.11107 Avicennia marina
MSTRG.22716 Avicennia marina
MSTRG.9444 Avicennia marina
Nitab4.5_0000508g0240 Nicotiana tabacum
Nitab4.5_0000620g0180 Nicotiana tabacum
Nitab4.5_0001210g0070 Nicotiana tabacum
Nitab4.5_0002339g0040 Nicotiana tabacum
Nitab4.5_0002591g0010 Nicotiana tabacum
Nitab4.5_0009276g0010 Nicotiana tabacum
Nitab4.5_0010068g0020 Nicotiana tabacum
Nn1g04228 Nelumbo nucifera
Nn8g39341 Nelumbo nucifera
Oeu020517.1 Olea europaea
Oeu022415.1 Olea europaea
Oeu052308.2 Olea europaea
Os01g0610100 Oryza sativa ssp. japonica
Peaxi162Scf00207g00754 Petunia axillaris
Peaxi162Scf00251g01120 Petunia axillaris
PGR044G2143 Punica granatum
PGSC0003DMG400007564 Solanum tuberosum
PGSC0003DMG400025542 Solanum tuberosum
PGSC0003DMG400028549 Solanum tuberosum
Phvul.001G054000 Phaseolus vulgaris
Potri.006G248700 Populus trichocarpa
Potri.018G032600 Populus trichocarpa
Pp3c12_23580 Physcomitrium patens
Pp3c3_36670 Physcomitrium patens
Pp3c4_7470 Physcomitrium patens
Pp3c8_3370 Physcomitrium patens
PRCOL_00000662 Prasinoderma coloniale
Prupe.1G471600 Prunus persica
Psat6g030160 Pisum sativum
PSO339G4791 Papaver somniferum
PSO801G0434 Papaver somniferum
QL07p015653 Quercus lobata
RcHm_v2.0_Chr6g0298821 Rosa chinensis
Rhsim02G0193000 Rhododendron simsii
Rhsim07G0146800 Rhododendron simsii
Sabra06G0194600 Salix brachista
Sabra18G0033300 Salix brachista
SalBow2G1989 Salvia bowleyana
Sc23g0006960 Simmondsia chinensis
Sed0008081 Sechium edule
Sed0016723 Sechium edule
Sed0021950 Sechium edule
SEGI_03101 Sequoiadendron giganteum
SGA_v2.0_scaffold37G14799 Striga asiatica
SGA_v2.0_scaffold5G02647 Striga asiatica
SMO117G0315 Selaginella moellendorffii
Solyc06g067880.3 Solanum lycopersicum
Solyc07g039610.1 Solanum lycopersicum
Solyc07g040850.1 Solanum lycopersicum
Solyc08g067480.4 Solanum lycopersicum
Sopen06g025160 Solanum pennellii
Sopen08g021420 Solanum pennellii
Sp4g05100 Schrenkiella parvula
Sp7g30300 Schrenkiella parvula
TAR383G0278 Trochodendron aralioides
TAR626G1382 Trochodendron aralioides
TAR636G0216 Trochodendron aralioides
THA.LOC104803630 Tarenaya hassleriana
THA.LOC104803825 Tarenaya hassleriana
Thecc.09G147300 Theobroma cacao
Thhalv10000341m.g Eutrema salsugineum
Thhalv10026373m.g Eutrema salsugineum
TPR.G15667 Trifolium pratense
TWI32G0730 Tripterygium wilfordii
TWI34G0357 Tripterygium wilfordii
TWI63G0930 Tripterygium wilfordii
unitig_21.g20349 Utricularia gibba
vmacro11129 Vaccinium macrocarpon
vmacro12625 Vaccinium macrocarpon
VMungo0647G2507 Vigna mungo
Zm00001eb161810 Zea mays
Zm00001eb357970 Zea mays

User provided reference genes

Program Settings