Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A08p00550 Brassica napus
Aa31LG10G260 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.5488 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.5490 Anthoceros agrestis
Actinidia21857 Actinidia chinensis
Actinidia33816 Actinidia chinensis
Actinidia37163 Actinidia chinensis
Ah.06g181290 Amaranthus hybridus
AL1G64060 Arabidopsis lyrata
Aqoxy102s004 Aquilegia oxysepala
Aqoxy2G00648 Aquilegia oxysepala
Aqoxy2G03521 Aquilegia oxysepala
Aqoxy6G00167 Aquilegia oxysepala
Aqoxy6G02866 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.08VBYE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FCEI8S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HUB5JH Arachis hypogaea
AT1G55915 Arabidopsis thaliana
ATR0580G345 Amborella trichopoda
Atru.chr1.2766 Acer truncatum
Atru.chr2.3667 Acer truncatum
AUR62001338 Chenopodium quinoa
AUR62017070 Chenopodium quinoa
AUR62024541 Chenopodium quinoa
AUR62024542 Chenopodium quinoa
AUR62025667 Chenopodium quinoa
AUR62028647 Chenopodium quinoa
AUR62036422 Chenopodium quinoa
AUR62036428 Chenopodium quinoa
AUR62037470 Chenopodium quinoa
BcaC01g01534 Brassica carinata
BcaC02g10065 Brassica carinata
BcaC06g31883 Brassica carinata
BolC3t21592H Brassica oleracea
BolC3t21631H Brassica oleracea
BolC4t24358H Brassica oleracea
BolC4t24887H Brassica oleracea
BraA08t32074Z Brassica rapa
BraA08t32113Z Brassica rapa
C03p92860 Brassica napus
C03p93330 Brassica napus
C04p28150 Brassica napus
C04p33240 Brassica napus
CAN.G790.42 Capsicum annuum
CANSAT11G1165 Cannabis sativa
CARHR045630 Cardamine hirsuta
Carub.0001s4451 Capsella rubella
Ca_00986_v3 Cicer arietinum L.
Ca_01000_v3 Cicer arietinum L.
Ca_12436_v3 Cicer arietinum L.
CBR_g12763 Chara braunii
Cc04_g00490 Coffea canephora
Cc05_g14820 Coffea canephora
CDE04G0040 Ceratophyllum demersum
Cfa022425 Carpinus fangiana
Cfa025882 Carpinus fangiana
Ciclev10010194m.g Citrus clementina
Ciclev10027497m.g Citrus clementina
CiPaw.11G202400 Carya illinoinensis
CiPaw.12G136700 Carya illinoinensis
ClCG04G000610 Citrullus lanatus
ClCG09G021170 Citrullus lanatus
COL.COLO4_09809 Corchorus olitorius
Cpa.g.sc12.172 Carica papaya
Cre07.g333850 Chlamydomonas reinhardtii
CsaV3_7G018340 Cucumis sativus L.
CSS0034763 Camellia sinensis var. sinensis
CSS0038448 Camellia sinensis var. sinensis
DCAR_007666 Daucus carota
DCAR_017083 Daucus carota
Dinv10321 Davidia involucrata
Dinv37806 Davidia involucrata
Duzib213G0099 Durio zibethinus
ECA236G2484 Erigeron canadensis
EL10Ac4g07604 Beta vulgaris
EL10Ac7g18155 Beta vulgaris
EL10Ac8g20245 Beta vulgaris
Eucgr.F02068 Eucalyptus grandis
Eucgr.F03997 Eucalyptus grandis
FAN02G3068 Fragaria x ananassa
FAN05G4329 Fragaria x ananassa
FAN09G1601 Fragaria x ananassa
FAN11G0659 Fragaria x ananassa
FAN14G2430 Fragaria x ananassa
FAN21G0447 Fragaria x ananassa
FAN25G2240 Fragaria x ananassa
FvH4_3g29470 Fragaria vesca
FvH4_6g37480 Fragaria vesca
Glyma.02G004900 Glycine max
Glyma.18G078800 Glycine max
Gohir.A01G137565 Gossypium hirsutum
Gohir.A04G002900 Gossypium hirsutum
Gohir.A04G133100 Gossypium hirsutum
Gohir.A06G044200 Gossypium hirsutum
Gohir.A08G180800 Gossypium hirsutum
Gohir.A13G106200 Gossypium hirsutum
Gohir.D06G176332 Gossypium hirsutum
Gohir.D13G137300 Gossypium hirsutum
Gorai.010G207400 Gossypium raimondii
Gorai.010G207500 Gossypium raimondii
Gorai.013G153900 Gossypium raimondii
GSVIVG01014644001 Vitis vinifera
HanXRQChr09g0277351 Helianthus annuus
HanXRQChr11g0333391 Helianthus annuus
Haze_09806 Corylus avellana
Hma1.2p1_0036F.1_g022545 Hydrangea macrophylla
Hma1.2p1_0036F.1_g022550 Hydrangea macrophylla
Hma1.2p1_0090F.1_g045620 Hydrangea macrophylla
HPP92_017868 Vanilla planifolia
HPP92_018337 Vanilla planifolia
Hund01908 Selenicereus undatus
Hund05673 Selenicereus undatus
Lalb_Chr15g0081991 Lupinus albus
Lj1A888G39 Lonicera japonica
Lj3g0006153 Lotus japonicus
Lj6g0002743 Lotus japonicus
Lj6g0015704 Lotus japonicus
Lj9A540T81 Lonicera japonica
Lsat_1_v5_gn_1_26441 Lactuca sativa
Lsat_1_v5_gn_4_89280 Lactuca sativa
Manes.03G139900 Manihot esculenta
Manes.15G061600 Manihot esculenta
Mapoly0109s0050 Marchantia polymorpha
MBI16_g46430_MAGBIO Magnolia biondii
MCO09G622 Micromonas commoda
MD09G1157700 Malus domestica
MD11G1201700 Malus domestica
Medtr2g105670 Medicago truncatula
Medtr3g058580 Medicago truncatula
MELO3C009034.2 Cucumis melo
MELO3C024918.2 Cucumis melo
Migut.H01764 Erythranthe guttata
MSTRG.14479 Avicennia marina
MSTRG.22510 Avicennia marina
Nitab4.5_0000163g0280 Nicotiana tabacum
Nitab4.5_0001691g0030 Nicotiana tabacum
Nitab4.5_0002517g0010 Nicotiana tabacum
Nitab4.5_0002885g0030 Nicotiana tabacum
Nn1g07481 Nelumbo nucifera
Nn3g19300 Nelumbo nucifera
Oeu041432.1 Olea europaea
Oeu051387.2 Olea europaea
Os06g0191200 Oryza sativa ssp. japonica
Peaxi162Scf00038g02438 Petunia axillaris
Peaxi162Scf00955g00007 Petunia axillaris
PGR102G0515 Punica granatum
PGSC0003DMG400009184 Solanum tuberosum
PGSC0003DMG400029797 Solanum tuberosum
Phvul.006G055600 Phaseolus vulgaris
Potri.008G009700 Populus trichocarpa
Potri.010G249400 Populus trichocarpa
Potri.011G092900 Populus trichocarpa
Pp3c5_3280 Physcomitrium patens
PRCOL_00000756 Prasinoderma coloniale
Prupe.3G168300 Prunus persica
Prupe.4G239900 Prunus persica
Psat5g170040 Pisum sativum
Psat7g121520 Pisum sativum
PSO063G5220 Papaver somniferum
PSO782G1032 Papaver somniferum
QL05p083582 Quercus lobata
QL05p083713 Quercus lobata
QL05p083734 Quercus lobata
QL08p004807 Quercus lobata
RcHm_v2.0_Chr2g0150321 Rosa chinensis
RcHm_v2.0_Chr5g0054021 Rosa chinensis
RcHm_v2.0_Chr5g0054341 Rosa chinensis
Rhsim04G0013800 Rhododendron simsii
Rhsim08G0246600 Rhododendron simsii
Sabra08G0005700 Salix brachista
Sabra10G0194100 Salix brachista
SalBow6G3752 Salvia bowleyana
Sc16g0007990 Simmondsia chinensis
Sed0002105 Sechium edule
Sed0010386 Sechium edule
Sed0027119 Sechium edule
SEGI_22543 Sequoiadendron giganteum
SEGI_36313 Sequoiadendron giganteum
SGA_v2.0_scaffold122G33294 Striga asiatica
SGA_v2.0_scaffold42G16002 Striga asiatica
SHI26527 Sapria himalayana
SMO361G0751 Selaginella moellendorffii
Solyc03g123810.1 Solanum lycopersicum
Solyc12g015660.2 Solanum lycopersicum
Sopen12g007570 Solanum pennellii
Sp1g41520 Schrenkiella parvula
TAR624G0752 Trochodendron aralioides
TAR626G1285 Trochodendron aralioides
THA.LOC104810286 Tarenaya hassleriana
Thecc.07G016500 Theobroma cacao
Thhalv10011589m.g Eutrema salsugineum
TPR.G30741 Trifolium pratense
TWI38G0990 Tripterygium wilfordii
TWI39G0701 Tripterygium wilfordii
unitig_27.g25148 Utricularia gibba
vmacro09657 Vaccinium macrocarpon
vmacro18704 Vaccinium macrocarpon
VMungo0540G0232 Vigna mungo
VMungo1080G0425 Vigna mungo
Zm00001eb374280 Zea mays

User provided reference genes

Program Settings