Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p14670 Brassica napus
A10p30690 Brassica napus
Aa31LG8G15890 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.3880 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.3882 Anthoceros agrestis
Actinidia08151 Actinidia chinensis
Actinidia13495 Actinidia chinensis
Ah.04g152720 Amaranthus hybridus
Ah.06g184910 Amaranthus hybridus
Ah.11g049610 Amaranthus hybridus
AL3G22240 Arabidopsis lyrata
AL3G39940 Arabidopsis lyrata
AL3G53170 Arabidopsis lyrata
AL4G18520 Arabidopsis lyrata
AL6G15560 Arabidopsis lyrata
AL6G25810 Arabidopsis lyrata
AL6G39020 Arabidopsis lyrata
AL6G44250 Arabidopsis lyrata
Aqoxy3G02886 Aquilegia oxysepala
Aqoxy6G00029 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1EZN5T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.27SX2S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.566SHA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MAV50X Arachis hypogaea
AT2G18770 Arabidopsis thaliana
AT5G05670 Arabidopsis thaliana
ATR0199G007 Amborella trichopoda
ATR0763G280 Amborella trichopoda
Atru.chr11.2070 Acer truncatum
Atru.chr5.3110 Acer truncatum
AUR62027450 Chenopodium quinoa
AUR62031250 Chenopodium quinoa
BcaB01g05755 Brassica carinata
BcaB01g05959 Brassica carinata
BcaB03g16667 Brassica carinata
BcaC06g32272 Brassica carinata
BcaC06g36459 Brassica carinata
BolC3t12827H Brassica oleracea
BolC7t40789H Brassica oleracea
BolC9t54324H Brassica oleracea
BolC9t59879H Brassica oleracea
BraA03t09601Z Brassica rapa
BraA07t27987Z Brassica rapa
BraA10t45110Z Brassica rapa
C03p02730 Brassica napus
C09p14230 Brassica napus
C09p71170 Brassica napus
CAN.G484.27 Capsicum annuum
CAN.G546.30 Capsicum annuum
CANSAT01G0332 Cannabis sativa
CARHR109370 Cardamine hirsuta
CARHR207610 Cardamine hirsuta
Carub.0003s3304 Capsella rubella
Carub.0006s0456 Capsella rubella
Ca_03139_v3 Cicer arietinum L.
CBR_g6524 Chara braunii
Cc01_g10380 Coffea canephora
CDE06G2515 Ceratophyllum demersum
CDE07G0297 Ceratophyllum demersum
Cfa009179 Carpinus fangiana
Cfa024738 Carpinus fangiana
Ciclev10032463m.g Citrus clementina
CiPaw.05G186600 Carya illinoinensis
ClCG05G025490 Citrullus lanatus
COL.COLO4_16919 Corchorus olitorius
Cre17.g718350 Chlamydomonas reinhardtii
CsaV3_5G031410 Cucumis sativus L.
CSS0045981 Camellia sinensis var. sinensis
DCAR_001175 Daucus carota
DCAR_008345 Daucus carota
DCAR_010112 Daucus carota
Dinv17534 Davidia involucrata
Dinv29446 Davidia involucrata
Duzib084G0257 Durio zibethinus
Duzib205G0939 Durio zibethinus
ECA232G2835 Erigeron canadensis
ECA248G2324 Erigeron canadensis
EL10Ac5g10731 Beta vulgaris
Eucgr.H02550 Eucalyptus grandis
FAN07G0063 Fragaria x ananassa
FAN11G3592 Fragaria x ananassa
FAN12G1958 Fragaria x ananassa
FAN21G2683 Fragaria x ananassa
FAN22G0068 Fragaria x ananassa
FAN25G3364 Fragaria x ananassa
FvH4_3g28340 Fragaria vesca
FvH4_4g10641 Fragaria vesca
Glyma.01G029000 Glycine max
Glyma.02G036200 Glycine max
Glyma.08G284800 Glycine max
Gohir.A03G000026 Gossypium hirsutum
Gohir.A08G153100 Gossypium hirsutum
Gohir.D03G176800 Gossypium hirsutum
Gohir.D08G174000 Gossypium hirsutum
Gorai.003G186100 Gossypium raimondii
Gorai.004G181700 Gossypium raimondii
GSVIVG01007725001 Vitis vinifera
GSVIVG01013784001 Vitis vinifera
HanXRQChr13g0415431 Helianthus annuus
Haze_12213 Corylus avellana
Hma1.2p1_0160F.1_g071100 Hydrangea macrophylla
Hma1.2p1_0223F.1_g094350 Hydrangea macrophylla
HPP92_005090 Vanilla planifolia
HPP92_024705 Vanilla planifolia
Hund02753 Selenicereus undatus
Hund09448 Selenicereus undatus
Lalb_Chr09g0326281 Lupinus albus
Lalb_Chr16g0382141 Lupinus albus
Lj2A165T38 Lonicera japonica
Lj2g0023712 Lotus japonicus
Lj6A808T47 Lonicera japonica
Lsat_1_v5_gn_1_119941 Lactuca sativa
Lsat_1_v5_gn_5_52981 Lactuca sativa
Lsat_1_v5_gn_5_70981 Lactuca sativa
Lsat_1_v5_gn_6_83720 Lactuca sativa
Lsat_1_v5_gn_9_116520 Lactuca sativa
Manes.12G026100 Manihot esculenta
Manes.13G027800 Manihot esculenta
Mapoly0005s0007 Marchantia polymorpha
MBI10_g27995_MAGBIO Magnolia biondii
MCO02G138 Micromonas commoda
MD06G1037800 Malus domestica
MD10G1002700 Malus domestica
MD15G1134100 Malus domestica
Medtr4g071550 Medicago truncatula
Medtr5g033930 Medicago truncatula
MELO3C011981.2 Cucumis melo
Migut.L01464 Erythranthe guttata
MSTRG.13359 Avicennia marina
MSTRG.7908 Avicennia marina
Nitab4.5_0000329g0140 Nicotiana tabacum
Nitab4.5_0000570g0070 Nicotiana tabacum
Nitab4.5_0001819g0040 Nicotiana tabacum
Nitab4.5_0004438g0070 Nicotiana tabacum
Nn3g18717 Nelumbo nucifera
Oeu056411.1 Olea europaea
Oeu059926.1 Olea europaea
Os06g0473100 Oryza sativa ssp. japonica
Os08g0524000 Oryza sativa ssp. japonica
Peaxi162Scf00086g00133 Petunia axillaris
Peaxi162Scf00086g00329 Petunia axillaris
PGR119G0039 Punica granatum
PGSC0003DMG400000451 Solanum tuberosum
PGSC0003DMG400020871 Solanum tuberosum
Phvul.002G064800 Phaseolus vulgaris
Potri.002G020900 Populus trichocarpa
Potri.009G001600 Populus trichocarpa
Pp3c4_20930 Physcomitrium patens
PRCOL_00003573 Prasinoderma coloniale
Prupe.4G272800 Prunus persica
Prupe.5G031200 Prunus persica
Psat1g056440 Pisum sativum
Psat2g102320 Pisum sativum
Psat3g172320 Pisum sativum
Psat6g027600 Pisum sativum
Psat7g182200 Pisum sativum
PSO063G2065 Papaver somniferum
PSO063G3439 Papaver somniferum
PSO832G1583 Papaver somniferum
QL03p059258 Quercus lobata
RcHm_v2.0_Chr2g0115401 Rosa chinensis
RcHm_v2.0_Chr4g0406261 Rosa chinensis
RcHm_v2.0_Chr5g0051221 Rosa chinensis
RcHm_v2.0_Chr5g0051231 Rosa chinensis
RcHm_v2.0_Chr7g0219271 Rosa chinensis
Rhsim12G0043300 Rhododendron simsii
SalBow2G0701 Salvia bowleyana
SalBow2G1763 Salvia bowleyana
SalBow8G5473 Salvia bowleyana
Sc12g0005240 Simmondsia chinensis
Sed0009810 Sechium edule
Sed0017421 Sechium edule
SEGI_14035 Sequoiadendron giganteum
SEGI_19255 Sequoiadendron giganteum
SEGI_26072 Sequoiadendron giganteum
SGA_v2.0_scaffold63G21706 Striga asiatica
SMO116G0362 Selaginella moellendorffii
Solyc03g112450.4 Solanum lycopersicum
Solyc11g043150.2 Solanum lycopersicum
Sopen03g031530 Solanum pennellii
Sopen11g019580 Solanum pennellii
Sp3g32260 Schrenkiella parvula
Sp6g37220 Schrenkiella parvula
TAR371G0246 Trochodendron aralioides
TAR629G3074 Trochodendron aralioides
THA.LOC104807784 Tarenaya hassleriana
THA.LOC104824779 Tarenaya hassleriana
Thecc.03G311500 Theobroma cacao
Thhalv10014432m.g Eutrema salsugineum
Thhalv10022817m.g Eutrema salsugineum
TPR.G16233 Trifolium pratense
TPR.G21092 Trifolium pratense
TWI18G0866 Tripterygium wilfordii
unitig_22.g6429 Utricularia gibba
unitig_8.g3149 Utricularia gibba
vmacro01152 Vaccinium macrocarpon
VMungo1215G2070 Vigna mungo
Zm00001eb010350 Zea mays
Zm00001eb042120 Zea mays
Zm00001eb178650 Zea mays

User provided reference genes

Program Settings