Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p26430 Brassica napus
A06p08660 Brassica napus
A08p32480 Brassica napus
A09p63450 Brassica napus
Aa31LG1G1740 Aethionema arabicum
Aa31LG2G6170 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.841 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.3885 Anthoceros agrestis
Actinidia08079 Actinidia chinensis
Actinidia09660 Actinidia chinensis
Actinidia30663 Actinidia chinensis
Ah.03g136290 Amaranthus hybridus
AL1G24710 Arabidopsis lyrata
AL5G15110 Arabidopsis lyrata
Aqoxy5G03439 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.DD2PIM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R6HZSL Arachis hypogaea
AT1G13060 Arabidopsis thaliana
AT3G26340 Arabidopsis thaliana
ATR1120G105 Amborella trichopoda
Atru.chr11.2293 Acer truncatum
AUR62005593 Chenopodium quinoa
AUR62024135 Chenopodium quinoa
BcaB08g34231 Brassica carinata
BcaC01g02192 Brassica carinata
BcaC05g25088 Brassica carinata
BcaC07g37608 Brassica carinata
BcaNung06606 Brassica carinata
BolC5t29773H Brassica oleracea
BolC8t47970H Brassica oleracea
BolC8t49206H Brassica oleracea
BolC8t52226H Brassica oleracea
BolC9t54321H Brassica oleracea
BolSC21t60300H Brassica oleracea
BraA01t00949Z Brassica rapa
BraA03t11858Z Brassica rapa
BraA06t24062Z Brassica rapa
BraA08t35172Z Brassica rapa
BraA09t41695Z Brassica rapa
C05p10270 Brassica napus
C08p15800 Brassica napus
C08p46910 Brassica napus
CAN.G694.91 Capsicum annuum
CANSAT01G2316 Cannabis sativa
CARHR013390 Cardamine hirsuta
CARHR147350 Cardamine hirsuta
Carub.0001s1281 Capsella rubella
Carub.0005s0426 Capsella rubella
Ca_24508_v3 Cicer arietinum L.
CBR_g23349 Chara braunii
CBR_g34466 Chara braunii
Cc07_g08060 Coffea canephora
Cc11_g16770 Coffea canephora
CDE05G0059 Ceratophyllum demersum
CDE07G0715 Ceratophyllum demersum
Cfa009337 Carpinus fangiana
Cfa020602 Carpinus fangiana
Cfa025082 Carpinus fangiana
Ciclev10032238m.g Citrus clementina
CiPaw.05G112700 Carya illinoinensis
CiPaw.06G100800 Carya illinoinensis
ClCG08G010150 Citrullus lanatus
ClCG11G013810 Citrullus lanatus
COL.COLO4_15071 Corchorus olitorius
COL.COLO4_20354 Corchorus olitorius
COL.COLO4_24638 Corchorus olitorius
Cpa.g.sc43.24 Carica papaya
Cre10.g461950 Chlamydomonas reinhardtii
CsaV3_5G030400 Cucumis sativus L.
CsaV3_6G032330 Cucumis sativus L.
CSS0015662 Camellia sinensis var. sinensis
CSS0027762 Camellia sinensis var. sinensis
DCAR_026471 Daucus carota
DCAR_026523 Daucus carota
Dinv10975 Davidia involucrata
Dinv14816 Davidia involucrata
Duzib251G0571 Durio zibethinus
Duzib268G0982 Durio zibethinus
ECA233G4198 Erigeron canadensis
ECA246G0095 Erigeron canadensis
EL10Ac6g13472 Beta vulgaris
Eucgr.H04655 Eucalyptus grandis
FAN07G1700 Fragaria x ananassa
FAN12G0555 Fragaria x ananassa
FAN12G2439 Fragaria x ananassa
FAN17G2448 Fragaria x ananassa
FAN22G2268 Fragaria x ananassa
FvH4_4g24020 Fragaria vesca
Glyma.04G194700 Glycine max
Glyma.06G171200 Glycine max
Gohir.A01G160500 Gossypium hirsutum
Gohir.A04G138900 Gossypium hirsutum
Gohir.D01G155200 Gossypium hirsutum
Gohir.D04G181800 Gossypium hirsutum
Gorai.002G192400 Gossypium raimondii
Gorai.012G175200 Gossypium raimondii
GSVIVG01010375001 Vitis vinifera
HanXRQChr06g0180701 Helianthus annuus
HanXRQChr08g0207581 Helianthus annuus
HanXRQChr12g0372411 Helianthus annuus
Haze_12385 Corylus avellana
Haze_26535 Corylus avellana
Hma1.2p1_0055F.1_g031530 Hydrangea macrophylla
Hma1.2p1_0458F.1_g157100 Hydrangea macrophylla
Hma1.2p1_0531F.1_g173410 Hydrangea macrophylla
HPP92_020236 Vanilla planifolia
Hund21776 Selenicereus undatus
Hund25449 Selenicereus undatus
Lalb_Chr06g0172271 Lupinus albus
Lalb_Chr06g0172281 Lupinus albus
Lalb_Chr07g0183311 Lupinus albus
Lalb_Chr12g0202151 Lupinus albus
Lj1g0010419 Lotus japonicus
Lj3C1066T5 Lonicera japonica
Lj6A824T74 Lonicera japonica
Lsat_1_v5_gn_3_130100 Lactuca sativa
Lsat_1_v5_gn_8_149501 Lactuca sativa
Manes.12G013500 Manihot esculenta
Manes.13G017700 Manihot esculenta
Mapoly0021s0078 Marchantia polymorpha
MBI04_g08407_MAGBIO Magnolia biondii
MBI04_g47462_MAGBIO Magnolia biondii
MCO06G264 Micromonas commoda
MD06G1053500 Malus domestica
MD10G1030600 Malus domestica
MD16G1116800 Malus domestica
Medtr3g089040 Medicago truncatula
MELO3C011449.2 Cucumis melo
MELO3C011880.2 Cucumis melo
Migut.E00028 Erythranthe guttata
MSTRG.2454 Avicennia marina
Nitab4.5_0000071g0160 Nicotiana tabacum
Nitab4.5_0000582g0200 Nicotiana tabacum
Nitab4.5_0004212g0060 Nicotiana tabacum
Nitab4.5_0012482g0010 Nicotiana tabacum
Nn3g16510 Nelumbo nucifera
Oeu020301.1 Olea europaea
Oeu049152.1 Olea europaea
Oeu056675.1 Olea europaea
Os06g0153800 Oryza sativa ssp. japonica
Peaxi162Scf00858g00310 Petunia axillaris
Peaxi162Scf01227g00031 Petunia axillaris
PGR119G0878 Punica granatum
PGSC0003DMG400014972 Solanum tuberosum
PGSC0003DMG400023337 Solanum tuberosum
Phvul.009G167300 Phaseolus vulgaris
Potri.008G177000 Populus trichocarpa
Potri.010G058100 Populus trichocarpa
Pp3c11_2970 Physcomitrium patens
Pp3c7_21050 Physcomitrium patens
PRCOL_00003194 Prasinoderma coloniale
Prupe.1G229300 Prunus persica
Psat0s14g0120 Pisum sativum
Psat6g126800 Pisum sativum
Psat6g126880 Pisum sativum
PSO063G0094 Papaver somniferum
PSO782G4279 Papaver somniferum
QL03p054247 Quercus lobata
QL04p035333 Quercus lobata
QL05p055614 Quercus lobata
RcHm_v2.0_Chr4g0430701 Rosa chinensis
RcHm_v2.0_Chr5g0003071 Rosa chinensis
Rhsim12G0028500 Rhododendron simsii
Rhsim12G0102400 Rhododendron simsii
Sabra08G0134800 Salix brachista
Sabra10G0047300 Salix brachista
SalBow1G2866 Salvia bowleyana
Sc01g0009880 Simmondsia chinensis
Sed0004676 Sechium edule
Sed0010714 Sechium edule
Sed0019386 Sechium edule
SGA_v2.0_scaffold202G41446 Striga asiatica
SGA_v2.0_scaffold87G27141 Striga asiatica
SGA_v2.0_scaffold96G29099 Striga asiatica
SHI04151 Sapria himalayana
SMO147G0030 Selaginella moellendorffii
Solyc03g063420.2 Solanum lycopersicum
Solyc03g063450.2 Solanum lycopersicum
Solyc05g056160.3 Solanum lycopersicum
Sopen03g016110 Solanum pennellii
Sopen03g016120 Solanum pennellii
Sopen05g034570 Solanum pennellii
Sp1g11610 Schrenkiella parvula
Sp2g15490 Schrenkiella parvula
TAR629G2699 Trochodendron aralioides
THA.LOC104812691 Tarenaya hassleriana
THA.LOC104814351 Tarenaya hassleriana
Thecc.02G276700 Theobroma cacao
Thhalv10004762m.g Eutrema salsugineum
Thhalv10008454m.g Eutrema salsugineum
TPR.G26137 Trifolium pratense
TPR.G750 Trifolium pratense
TWI18G0413 Tripterygium wilfordii
TWI36G0673 Tripterygium wilfordii
unitig_52.g17190 Utricularia gibba
unitig_62.g23655 Utricularia gibba
vmacro01074 Vaccinium macrocarpon
vmacro20451 Vaccinium macrocarpon
VMungo1309G0564 Vigna mungo
Zm00001eb376670 Zea mays

User provided reference genes

Program Settings