Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p01800 Brassica napus
A03p05900 Brassica napus
A08p25910 Brassica napus
A08p25920 Brassica napus
A09p38010 Brassica napus
A10p24960 Brassica napus
Aa31LG3G14410 Aethionema arabicum
Aa31sc300G10 Aethionema arabicum
Actinidia09608 Actinidia chinensis
Actinidia22126 Actinidia chinensis
Actinidia30598 Actinidia chinensis
Actinidia34007 Actinidia chinensis
Ah.03g135690 Amaranthus hybridus
AL1G41590 Arabidopsis lyrata
AL1G41600 Arabidopsis lyrata
AL6G23870 Arabidopsis lyrata
Aqoxy3G01823 Aquilegia oxysepala
Aqoxy5G03202 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.FX1Z4A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TDR434 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ULYV8E Arachis hypogaea
AT1G28080 Arabidopsis thaliana
AT5G13250 Arabidopsis thaliana
ATR0582G082 Amborella trichopoda
Atru.chr11.2413 Acer truncatum
AUR62028859 Chenopodium quinoa
BcaB01g05366 Brassica carinata
BcaB03g12138 Brassica carinata
BcaB03g12139 Brassica carinata
BcaB03g13958 Brassica carinata
BcaB03g13959 Brassica carinata
BcaC01g00006 Brassica carinata
BcaC04g19132 Brassica carinata
BcaC05g26623 Brassica carinata
BcaC05g26625 Brassica carinata
BcaC05g26811 Brassica carinata
BcaC06g35330 Brassica carinata
BcaNung01873 Brassica carinata
BolC2t06544H Brassica oleracea
BolC3t13193H Brassica oleracea
BolC3t19722H Brassica oleracea
BolC5t31399H Brassica oleracea
BolC7t42236H Brassica oleracea
BolC9t59223H Brassica oleracea
BraA02t05155Z Brassica rapa
BraA03t09928Z Brassica rapa
BraA08t34543Z Brassica rapa
BraA09t39311Z Brassica rapa
BraA10t44558Z Brassica rapa
C02p06020 Brassica napus
C03p06820 Brassica napus
C03p74730 Brassica napus
C05p26750 Brassica napus
C07p17320 Brassica napus
C09p63830 Brassica napus
CAN.G1811.1 Capsicum annuum
CANSAT01G0203 Cannabis sativa
CARHR027530 Cardamine hirsuta
CARHR027540 Cardamine hirsuta
CARHR200200 Cardamine hirsuta
Carub.0001s2651 Capsella rubella
Carub.0006s1142 Capsella rubella
Cc11_g17500 Coffea canephora
CDE02G1781 Ceratophyllum demersum
CDE09G0174 Ceratophyllum demersum
Cfa009429 Carpinus fangiana
Ciclev10033818m.g Citrus clementina
CiPaw.05G103400 Carya illinoinensis
CiPaw.06G108000 Carya illinoinensis
ClCG06G001790 Citrullus lanatus
ClCG07G011810 Citrullus lanatus
ClCG07G011820 Citrullus lanatus
COL.COLO4_07618 Corchorus olitorius
Cpa.g.sc207.7 Carica papaya
Cpa.g.sc632.1 Carica papaya
CsaV3_4G002390 Cucumis sativus L.
CsaV3_6G007830 Cucumis sativus L.
CSS0040305 Camellia sinensis var. sinensis
DCAR_013181 Daucus carota
DCAR_024622 Daucus carota
Dinv12132 Davidia involucrata
Duzib052G0315 Durio zibethinus
Duzib132G1194 Durio zibethinus
Duzib248G1620 Durio zibethinus
ECA233G3644 Erigeron canadensis
EL10Ac6g13590 Beta vulgaris
Eucgr.B03547 Eucalyptus grandis
Eucgr.G01956 Eucalyptus grandis
FAN07G1125 Fragaria x ananassa
FAN12G0769 Fragaria x ananassa
FAN17G2315 Fragaria x ananassa
FvH4_4g22950 Fragaria vesca
Glyma.08G258100 Glycine max
Glyma.18G282500 Glycine max
Gohir.A03G151600 Gossypium hirsutum
Gohir.A04G101200 Gossypium hirsutum
Gohir.A12G140200 Gossypium hirsutum
Gohir.D02G174700 Gossypium hirsutum
Gohir.D04G140300 Gossypium hirsutum
Gohir.D12G144800 Gossypium hirsutum
Gorai.005G196300 Gossypium raimondii
Gorai.008G156200 Gossypium raimondii
Gorai.012G125300 Gossypium raimondii
GSVIVG01000970001 Vitis vinifera
HanXRQChr08g0210071 Helianthus annuus
HanXRQChr12g0362291 Helianthus annuus
Haze_12480 Corylus avellana
Haze_19343 Corylus avellana
HPP92_020103 Vanilla planifolia
HPP92_023020 Vanilla planifolia
HPP92_023033 Vanilla planifolia
HPP92_023034 Vanilla planifolia
HPP92_023093 Vanilla planifolia
Lalb_Chr04g0258081 Lupinus albus
Lalb_Chr10g0092161 Lupinus albus
Lj1g0015103 Lotus japonicus
Lj6P836T14 Lonicera japonica
Lsat_1_v5_gn_4_1321 Lactuca sativa
Manes.08G102600 Manihot esculenta
Manes.09G186300 Manihot esculenta
MBI07_g40352_MAGBIO Magnolia biondii
MBI11_g08161_MAGBIO Magnolia biondii
MBI16_g07678_MAGBIO Magnolia biondii
MD13G1127900 Malus domestica
MD16G1128300 Malus domestica
Medtr7g021270 Medicago truncatula
MELO3C017803.2 Cucumis melo
MELO3C022349.2 Cucumis melo
Migut.K01039 Erythranthe guttata
MSTRG.465 Avicennia marina
Nitab4.5_0009065g0010 Nicotiana tabacum
Nitab4.5_0014700g0010 Nicotiana tabacum
Nn2g15077 Nelumbo nucifera
Nn3g16314 Nelumbo nucifera
Nn3g16435 Nelumbo nucifera
Nn4g22186 Nelumbo nucifera
Nn6g35633 Nelumbo nucifera
Nn7g36065 Nelumbo nucifera
Oeu003275.1 Olea europaea
Oeu019432.1 Olea europaea
Oeu044505.1 Olea europaea
Oeu055475.1 Olea europaea
Os01g0928400 Oryza sativa ssp. japonica
Os04g0396500 Oryza sativa ssp. japonica
Os12g0479100 Oryza sativa ssp. japonica
Peaxi162Scf00128g01764 Petunia axillaris
Peaxi162Scf00234g01011 Petunia axillaris
PGR119G0713 Punica granatum
PGSC0003DMG400030004 Solanum tuberosum
Phvul.008G018800 Phaseolus vulgaris
Potri.001G062700 Populus trichocarpa
Potri.003G164800 Populus trichocarpa
Prupe.1G218100 Prunus persica
Psat3g189760 Pisum sativum
PSO017G1762 Papaver somniferum
PSO017G5218 Papaver somniferum
PSO478G0221 Papaver somniferum
PSO478G0797 Papaver somniferum
QL03p050027 Quercus lobata
QL10p038507 Quercus lobata
RcHm_v2.0_Chr4g0429231 Rosa chinensis
Rhsim12G0018700 Rhododendron simsii
Sabra03G0119900 Salix brachista
SalBow2G2541 Salvia bowleyana
SalBow5G0049 Salvia bowleyana
SalBow7G1980 Salvia bowleyana
Sc04g0010500 Simmondsia chinensis
Sc11g0000180 Simmondsia chinensis
Sed0004087 Sechium edule
Sed0018967 Sechium edule
Sed0023362 Sechium edule
SGA_v2.0_scaffold258G45789 Striga asiatica
Solyc01g009720.2 Solanum lycopersicum
Sopen01g005220 Solanum pennellii
Sp1g24260 Schrenkiella parvula
Sp6g30740 Schrenkiella parvula
TAR374G0208 Trochodendron aralioides
TAR622G1322 Trochodendron aralioides
TAR629G1336 Trochodendron aralioides
TAR636G0843 Trochodendron aralioides
THA.LOC104807363 Tarenaya hassleriana
THA.LOC104814204 Tarenaya hassleriana
THA.LOC104820532 Tarenaya hassleriana
THA.LOC104825469 Tarenaya hassleriana
Thecc.01G236300 Theobroma cacao
Thecc.02G195400 Theobroma cacao
Thhalv10009364m.g Eutrema salsugineum
Thhalv10009825m.g Eutrema salsugineum
Thhalv10015692m.g Eutrema salsugineum
TPR.G2909 Trifolium pratense
TWI18G1150 Tripterygium wilfordii
TWI36G0503 Tripterygium wilfordii
TWI75G1177 Tripterygium wilfordii
unitig_22.g6383 Utricularia gibba
VMungo1383G2170 Vigna mungo
Zm00001eb084940 Zea mays
Zm00001eb132990 Zea mays
Zm00001eb142450 Zea mays
Zm00001eb164420 Zea mays
Zm00001eb363740 Zea mays
Zm00001eb408820 Zea mays

User provided reference genes

Program Settings